Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
Smith, Andrew M, Jain, Miten, Mulroney, Logan, Garalde, Daniel R, Akeson, Mark
Published in PloS one (16.05.2019)
Published in PloS one (16.05.2019)
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Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
Byrne, Ashley, Beaudin, Anna E, Olsen, Hugh E, Jain, Miten, Cole, Charles, Palmer, Theron, DuBois, Rebecca M, Forsberg, E Camilla, Akeson, Mark, Vollmers, Christopher
Published in Nature communications (19.07.2017)
Published in Nature communications (19.07.2017)
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Discrimination among Protein Variants Using an Unfoldase-Coupled Nanopore
Nivala, Jeff, Mulroney, Logan, Li, Gabriel, Schreiber, Jacob, Akeson, Mark
Published in ACS nano (23.12.2014)
Published in ACS nano (23.12.2014)
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Automated forward and reverse ratcheting of DNA in a nanopore at 5-Å precision
CHERF, Gerald M, LIEBERMAN, Kate R, RASHID, Hytham, LAM, Christopher E, KARPLUS, Kevin, AKESON, Mark
Published in Nature biotechnology (01.04.2012)
Published in Nature biotechnology (01.04.2012)
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Journal Article
Linear assembly of a human centromere on the Y chromosome
Jain, Miten, Olsen, Hugh E, Turner, Daniel J, Stoddart, David, Bulazel, Kira V, Paten, Benedict, Haussler, David, Willard, Huntington F, Akeson, Mark, Miga, Karen H
Published in Nature biotechnology (01.04.2018)
Published in Nature biotechnology (01.04.2018)
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Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
Shafin, Kishwar, Pesout, Trevor, Lorig-Roach, Ryan, Haukness, Marina, Olsen, Hugh E, Bosworth, Colleen, Armstrong, Joel, Tigyi, Kristof, Maurer, Nicholas, Koren, Sergey, Sedlazeck, Fritz J, Marschall, Tobias, Mayes, Simon, Costa, Vania, Zook, Justin M, Liu, Kelvin J, Kilburn, Duncan, Sorensen, Melanie, Munson, Katy M, Vollger, Mitchell R, Monlong, Jean, Garrison, Erik, Eichler, Evan E, Salama, Sofie, Haussler, David, Green, Richard E, Akeson, Mark, Phillippy, Adam, Miga, Karen H, Carnevali, Paolo, Jain, Miten, Paten, Benedict
Published in Nature biotechnology (01.09.2020)
Published in Nature biotechnology (01.09.2020)
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Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands
Schreiber, Jacob, Wescoe, Zachary L., Abu-Shumays, Robin, Vivian, John T., Baatar, Baldandorj, Karplus, Kevin, Akeson, Mark
Published in Proceedings of the National Academy of Sciences - PNAS (19.11.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (19.11.2013)
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CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma
Liu, S John, Malatesta, Martina, Lien, Brian V, Saha, Parna, Thombare, Shivani S, Hong, Sung Jun, Pedraza, Leslie, Koontz, Mark, Seo, Kyounghee, Horlbeck, Max A, He, Daniel, Birk, Harjus S, Jain, Miten, Olsen, Hugh E, Akeson, Mark, Weissman, Jonathan S, Monje, Michelle, Gupta, Nalin, Raleigh, David R, Ullian, Erik M, Lim, Daniel A
Published in Genome Biology (31.03.2020)
Published in Genome Biology (31.03.2020)
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miRNA-independent function of long noncoding pri-miRNA loci
He, Daniel, Wu, David, Muller, Soren, Wang, Lin, Saha, Parna, Ahanger, Sajad Hamid, Liu, Siyuan John, Cui, Miao, Hong, Sung Jun, Jain, Miten, Olson, Hugh E, Akeson, Mark, Costello, Joseph F, Diaz, Aaron, Lim, Daniel A
Published in Proceedings of the National Academy of Sciences - PNAS (30.03.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (30.03.2021)
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Inflammation drives alternative first exon usage to regulate immune genes including a novel iron-regulated isoform of Aim2
Robinson, Elektra K, Jagannatha, Pratibha, Covarrubias, Sergio, Cattle, Matthew, Smaliy, Valeriya, Safavi, Rojin, Shapleigh, Barbara, Abu-Shumays, Robin, Jain, Miten, Cloonan, Suzanne M, Akeson, Mark, Brooks, Angela N, Carpenter, Susan
Published in eLife (28.05.2021)
Published in eLife (28.05.2021)
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Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing
Burton, Aaron S, Stahl, Sarah E, John, Kristen K, Jain, Miten, Juul, Sissel, Turner, Daniel J, Harrington, Eoghan D, Stoddart, David, Paten, Benedict, Akeson, Mark, Castro-Wallace, Sarah L
Published in Genes (09.01.2020)
Published in Genes (09.01.2020)
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Real-Time Culture-Independent Microbial Profiling Onboard the International Space Station using Nanopore Sequencing
Stahl-Rommel, Sarah, Jain, Miten, Nguyen, Hang N., Arnold, Richard G., Aunon-Chancellor, Serena M., Sharp, G. Marie, Castro, Christian, John, Kristen K., Juul, Sissel, Turner, Daniel, Stoddart, David, Paten, Benedict, Akeson, Mark, Burton, Aaron S., Castro-Wallace, Sarah L.
Published in Genes (16.01.2021)
Published in Genes (16.01.2021)
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Journal Article
Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore
Dunbar, William B, Akeson, Mark, Benner, Seico, Chen, Roger J. A, Wilson, Noah A, Abu-Shumays, Robin, Hurt, Nicholas, Lieberman, Kate R, Deamer, David W
Published in Nature nanotechnology (01.11.2007)
Published in Nature nanotechnology (01.11.2007)
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Microsecond Time-Scale Discrimination Among Polycytidylic Acid, Polyadenylic Acid, and Polyuridylic Acid as Homopolymers or as Segments Within Single RNA Molecules
Akeson, Mark, Branton, Daniel, Kasianowicz, John J., Brandin, Eric, Deamer, David W.
Published in Biophysical journal (01.12.1999)
Published in Biophysical journal (01.12.1999)
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Mapping the Position of DNA Polymerase-Bound DNA Templates in a Nanopore at 5 Å Resolution
Gyarfas, Brett, Olasagasti, Felix, Benner, Seico, Garalde, Daniel, Lieberman, Kate R, Akeson, Mark
Published in ACS nano (23.06.2009)
Published in ACS nano (23.06.2009)
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