Numerous Trigger-like Interactions of Kinases/Protein Phosphatases in Human Skeletal Muscles Can Underlie Transient Processes in Activation of Signaling Pathways during Exercise
Vertyshev, Alexander Yu, Akberdin, Ilya R, Kolpakov, Fedor A
Published in International journal of molecular sciences (01.07.2023)
Published in International journal of molecular sciences (01.07.2023)
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Journal Article
Impact of Negative Feedbacks on De Novo Pyrimidines Biosynthesis in Escherichia coli
Akberdin, Ilya R, Kozlov, Konstantin N, Kazantsev, Fedor V, Fadeev, Stanislav I, Likhoshvai, Vitaly A, Khlebodarova, Tamara M
Published in International journal of molecular sciences (02.03.2023)
Published in International journal of molecular sciences (02.03.2023)
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Physiologically Based Pharmacokinetic Modeling of Nanoparticle Biodistribution: A Review of Existing Models, Simulation Software, and Data Analysis Tools
Kutumova, Elena O, Akberdin, Ilya R, Kiselev, Ilya N, Sharipov, Ruslan N, Egorova, Vera S, Syrocheva, Anastasiia O, Parodi, Alessandro, Zamyatnin, Jr, Andrey A, Kolpakov, Fedor A
Published in International journal of molecular sciences (19.10.2022)
Published in International journal of molecular sciences (19.10.2022)
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A Modular Mathematical Model of Exercise-Induced Changes in Metabolism, Signaling, and Gene Expression in Human Skeletal Muscle
Akberdin, Ilya R., Kiselev, Ilya N., Pintus, Sergey S., Sharipov, Ruslan N., Vertyshev, Alexander Yu, Vinogradova, Olga L., Popov, Daniil V., Kolpakov, Fedor A.
Published in International journal of molecular sciences (01.10.2021)
Published in International journal of molecular sciences (01.10.2021)
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Journal Article
Pluripotency gene network dynamics: System views from parametric analysis
Akberdin, Ilya R, Omelyanchuk, Nadezda A, Fadeev, Stanislav I, Leskova, Natalya E, Oschepkova, Evgeniya A, Kazantsev, Fedor V, Matushkin, Yury G, Afonnikov, Dmitry A, Kolchanov, Nikolay A
Published in PloS one (29.03.2018)
Published in PloS one (29.03.2018)
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A Genome-Scale Metabolic Model of 2,3-Butanediol Production by Thermophilic Bacteria Geobacillus icigianus
Kulyashov, Mikhail, Peltek, Sergey E, Akberdin, Ilya R
Published in Microorganisms (Basel) (04.07.2020)
Published in Microorganisms (Basel) (04.07.2020)
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Physiologically based pharmacokinetic model for predicting the biodistribution of albumin nanoparticles after induction and recovery from acute lung injury
Kutumova, Elena O., Akberdin, Ilya R., Egorova, Vera S., Kolesova, Ekaterina P., Parodi, Alessandro, Pokrovsky, Vadim S., Zamyatnin, Jr, Andrey A., Kolpakov, Fedor A.
Published in Heliyon (30.05.2024)
Published in Heliyon (30.05.2024)
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A bird's-eye overview of molecular mechanisms regulating feed intake in chickens—with mammalian comparisons
Volyanskaya, Anastasiia R., Akberdin, Ilya R., Kulyashov, Mikhail A., Yevshin, Ivan S., Romanov, Michael N., Shagimardanova, Elena I., Gusev, Oleg A., Kolpakov, Fedor A.
Published in Animal Nutrition (01.06.2024)
Published in Animal Nutrition (01.06.2024)
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Genome-Wide Atlas of Promoter Expression Reveals Contribution of Transcribed Regulatory Elements to Genetic Control of Disuse-Mediated Atrophy of Skeletal Muscle
Pintus, Sergey S., Akberdin, Ilya R., Yevshin, Ivan, Makhnovskii, Pavel, Tyapkina, Oksana, Nigmetzyanov, Islam, Nurullin, Leniz, Devyatiyarov, Ruslan, Shagimardanova, Elena, Popov, Daniil, Kolpakov, Fedor A., Gusev, Oleg, Gazizova, Guzel R.
Published in Biology (Basel, Switzerland) (20.06.2021)
Published in Biology (Basel, Switzerland) (20.06.2021)
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Journal Article
Multicompartmental Mathematical Model of SARS-CoV-2 Distribution in Human Organs and Their Treatment
Afonyushkin, Vasiliy N, Akberdin, Ilya R, Kozlova, Yulia N, Schukin, Ivan A, Mironova, Tatyana E, Bobikova, Anna S, Cherepushkina, Viktoriya S, Donchenko, Nikolaj A, Poletaeva, Yulia E, Kolpakov, Fedor A
Published in Mathematics (Basel) (01.06.2022)
Published in Mathematics (Basel) (01.06.2022)
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Journal Article
Rare Earth Elements Alter Redox Balance in Methylomicrobium alcaliphilum 20ZR
Akberdin, Ilya R., Collins, David A., Hamilton, Richard, Oshchepkov, Dmitry Y., Shukla, Anil K., Nicora, Carrie D., Nakayasu, Ernesto S., Adkins, Joshua N., Kalyuzhnaya, Marina G.
Published in Frontiers in microbiology (27.11.2018)
Published in Frontiers in microbiology (27.11.2018)
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A new stochastic model for subgenomic hepatitis C virus replication considers drug resistant mutants
Ivanisenko, Nikita V, Mishchenko, Elena L, Akberdin, Ilya R, Demenkov, Pavel S, Likhoshvai, Vitaly A, Kozlov, Konstantin N, Todorov, Dmitry I, Gursky, Vitaly V, Samsonova, Maria G, Samsonov, Alexander M, Clausznitzer, Diana, Kaderali, Lars, Kolchanov, Nikolay A, Ivanisenko, Vladimir A
Published in PloS one (18.03.2014)
Published in PloS one (18.03.2014)
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Journal Article
Methane utilization in Methylomicrobium alcaliphilum 20ZR: a systems approach
Akberdin, Ilya R., Thompson, Merlin, Hamilton, Richard, Desai, Nalini, Alexander, Danny, Henard, Calvin A., Guarnieri, Michael T., Kalyuzhnaya, Marina G.
Published in Scientific reports (06.02.2018)
Published in Scientific reports (06.02.2018)
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Journal Article
Fatty Acid Biosynthesis Pathways in Methylomicrobium buryatense 5G(B1)
Demidenko, Aleksandr, Akberdin, Ilya R, Allemann, Marco, Allen, Eric E, Kalyuzhnaya, Marina G
Published in Frontiers in microbiology (10.01.2017)
Published in Frontiers in microbiology (10.01.2017)
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Journal Article
Author Correction: Methane utilization in Methylomicrobium alcaliphilum 20ZR: a systems approach
Akberdin, Ilya R., Thompson, Merlin, Hamilton, Richard, Desai, Nalini, Alexander, Danny, Henard, Calvin A., Guarnieri, Michael T., Kalyuzhnaya, Marina G.
Published in Scientific reports (14.03.2018)
Published in Scientific reports (14.03.2018)
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Journal Article
Impact of Negative Feedbacks on De Novo Pyrimidines Biosynthesis in IEscherichia coli/I
Akberdin, Ilya R, Kozlov, Konstantin N, Kazantsev, Fedor V, Fadeev, Stanislav I, Likhoshvai, Vitaly A, Khlebodarova, Tamara M
Published in International journal of molecular sciences (01.03.2023)
Published in International journal of molecular sciences (01.03.2023)
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Journal Article
A cellular automaton to model the development of primary shoot meristems of Arabidopsis thaliana
Akberdin, Ilya R, Ozonov, Evgeniy A, Mironova, Victoria V, Omelyanchuk, Nadezda A, Likhoshvai, Vitaly A, Gorpinchenko, Dmytry N, Kolchanov, Nikolai A
Published in Journal of bioinformatics and computational biology (01.04.2007)
Published in Journal of bioinformatics and computational biology (01.04.2007)
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