Search Results - "Akbari Rokn Abadi, Saeedeh" :: K.UTB vyhledávací portál

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HELIOS: High-speed sequence alignment in optics

by Maleki, Ehsan, Akbari Rokn Abadi, Saeedeh, Koohi, Somayyeh
Published in PLoS computational biology (01.11.2022)

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PC-mer: An Ultra-fast memory-efficient tool for metagenomics profiling and classification

by Akbari Rokn Abadi, Saeedeh, Mohammadi, Amirhossein, Koohi, Somayyeh
Published in PloS one (01.08.2024)

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A new profiling approach for DNA sequences based on the nucleotides' physicochemical features for accurate analysis of SARS-CoV-2 genomes

by Akbari Rokn Abadi, Saeedeh, Mohammadi, Amirhossein, Koohi, Somayyeh
Published in BMC genomics (18.05.2023)

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WalkIm: Compact image-based encoding for high-performance classification of biological sequences using simple tuning-free CNNs

by Akbari Rokn Abadi, Saeedeh, Mohammadi, Amirhossein, Koohi, Somayyeh
Published in PloS one (15.04.2022)

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Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture

by Akbari Rokn Abadi, Saeedeh, Hashemi Dijujin, Negin, Koohi, Somayyeh
Published in PloS one (15.01.2021)

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KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites

by Akbari Rokn Abadi, Saeedeh, Tabatabaei, SeyedehFatemeh, Koohi, Somayyeh
Published in Journal of translational medicine (16.10.2023)

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An accurate alignment-free protein sequence comparator based on physicochemical properties of amino acids

by Akbari Rokn Abadi, Saeedeh, Abdosalehi, Azam Sadat, Pouyamehr, Faezeh, Koohi, Somayyeh
Published in Scientific reports (01.07.2022)

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An optimized graph-based structure for single-cell RNA-seq cell-type classification based on non-linear dimension reduction

by Abadi, Saeedeh Akbari Rokn, Laghaee, Seyed Pouria, Koohi, Somayyeh
Published in BMC genomics (02.05.2023)

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Exploitation of wavelength, hardware, and path redundancies in fault-tolerant all-optical DCNs

by Akbari Rokn Abadi, Saeedeh, Koohi, Somayyeh
Published in Optical fiber technology (01.09.2019)

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Journal Article

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HELIOS: High-speed sequence alignment in optics

by Ehsan Maleki, Saeedeh Akbari Rokn Abadi, Somayyeh Koohi
Published in PLoS computational biology (01.11.2022)

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Journal Article

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O-TF and O-FTF, Optical Fault-Tolerant DCNs

by Rokn Abadi, Saeedeh Akbari, Koohi, Somayyeh
Published in 2018 26th Euromicro International Conference on Parallel, Distributed and Network-based Processing (PDP) (01.03.2018)

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Conference Proceeding

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An automated ultra-fast, memory-efficient, and accurate method for viral genome classification

by Abadi, Saeedeh Akbari Rokn, Mohammadi, Amirhossein, Koohi, Somayyeh
Published in Journal of biomedical informatics (01.03.2023)

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WalkIm: Compact image-based encoding for high-performance classification of biological sequences using simple tuning-free CNNs

by Saeedeh Akbari Rokn Abadi, Amirhossein Mohammadi, Somayyeh Koohi
Published in PloS one (01.01.2022)

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Journal Article

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An Assessment of PC-mer's Performance in Alignment-Free Phylogenetic Tree Construction

by Abadi, Saeedeh Akbari Rokn, Honarmand, Melika, Hajialinaghi, Ali, Koohi, Somayyeh
Year of Publication 21.11.2023

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An Assessment of PC-mer's Performance in Alignment-Free Phylogenetic Tree Construction

by Saeedeh Akbari Rokn Abadi, Honarmand, Melika, Hajialinaghi, Ali, Koohi, Somayyeh
Published in arXiv.org (21.11.2023)

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