Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
Karcher, Nicolai, Nigro, Eleonora, Punčochář, Michal, Blanco-Míguez, Aitor, Ciciani, Matteo, Manghi, Paolo, Zolfo, Moreno, Cumbo, Fabio, Manara, Serena, Golzato, Davide, Cereseto, Anna, Arumugam, Manimozhiyan, Bui, Thi Phuong Nam, Tytgat, Hanne L P, Valles-Colomer, Mireia, de Vos, Willem M, Segata, Nicola
Published in Genome Biology (14.07.2021)
Published in Genome Biology (14.07.2021)
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Journal Article
Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma
Ianiro, Gianluca, Rossi, Ernesto, Thomas, Andrew M., Schinzari, Giovanni, Masucci, Luca, Quaranta, Gianluca, Settanni, Carlo Romano, Lopetuso, Loris Riccardo, Armanini, Federica, Blanco-Miguez, Aitor, Asnicar, Francesco, Consolandi, Clarissa, Iacovelli, Roberto, Sanguinetti, Maurizio, Tortora, Giampaolo, Gasbarrini, Antonio, Segata, Nicola, Cammarota, Giovanni
Published in Nature communications (28.08.2020)
Published in Nature communications (28.08.2020)
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Journal Article
BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results
Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Sánchez, Borja, Lourenço, Anália
Published in PloS one (09.10.2018)
Published in PloS one (09.10.2018)
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Journal Article
Metabolomic and gut microbiome profiles across the spectrum of community-based COVID and non-COVID disease
Österdahl, Marc F., Whiston, Ronan, Sudre, Carole H., Asnicar, Francesco, Cheetham, Nathan J., Blanco Miguez, Aitor, Bowyer, Vicky, Antonelli, Michela, Snell, Olivia, dos Santos Canas, Liane, Hu, Christina, Wolf, Jonathan, Menni, Cristina, Malim, Michael, Hart, Deborah, Spector, Tim, Berry, Sarah, Segata, Nicola, Doores, Katie, Ourselin, Sebastien, Duncan, Emma L., Steves, Claire J.
Published in Scientific reports (27.06.2023)
Published in Scientific reports (27.06.2023)
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Journal Article
Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer Vaccines
Tomasi, Michele, Dalsass, Mattia, Beghini, Francesco, Zanella, Ilaria, Caproni, Elena, Fantappiè, Laura, Gagliardi, Assunta, Irene, Carmela, König, Enrico, Frattini, Luca, Masetti, Giulia, Isaac, Samine Jessica, Armanini, Federica, Cumbo, Fabio, Blanco-Míguez, Aitor, Grandi, Alberto, Segata, Nicola, Grandi, Guido
Published in Vaccines (Basel) (18.11.2021)
Published in Vaccines (Basel) (18.11.2021)
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Journal Article
Targeted depletion of pks + bacteria from a fecal microbiota using specific antibodies
Blanco-Míguez, Aitor, Marcos-Fernández, Raquel, Guadamuro-García, Lucía, Fdez-Riverola, Florentino, Cubiella, Joaquín, Lourenço, Anália, Margolles, Abelardo, Sánchez, Borja
Published in mSystems (29.06.2023)
Published in mSystems (29.06.2023)
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Journal Article
Computational prediction of the bioactivity potential of proteomes based on expert knowledge
Blanco-Míguez, Aitor, Blanco, Guillermo, Gutierrez-Jácome, Alberto, Fdez-Riverola, Florentino, Sánchez, Borja, Lourenço, Anália
Published in Journal of biomedical informatics (01.03.2019)
Published in Journal of biomedical informatics (01.03.2019)
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Journal Article
In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria
Hidalgo-Cantabrana, Claudio, Moro-García, Marco A, Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Lourenço, Anália, Alonso-Arias, Rebeca, Sánchez, Borja
Published in Frontiers in microbiology (08.09.2017)
Published in Frontiers in microbiology (08.09.2017)
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Journal Article
In silico and functional analyses of immunomodulatory peptides encrypted in the human gut metaproteome
Cambeiro-Pérez, Noelia, Hidalgo-Cantabrana, Claudio, Moro-García, Marco Antonio, Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Riestra, Sabino, Lourenço, Anália, Alonso-Arias, Rebeca, Margolles, Abelardo, Martínez-Carballo, Elena, Sánchez, Borja
Published in Journal of functional foods (01.07.2020)
Published in Journal of functional foods (01.07.2020)
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Journal Article
Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets
Blanco-Míguez, Aitor, Meier-Kolthoff, Jan P, Gutiérrez-Jácome, Alberto, Göker, Markus, Fdez-Riverola, Florentino, Sánchez, Borja, Lourenço, Anália
Published in PLoS computational biology (01.12.2016)
Published in PLoS computational biology (01.12.2016)
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Journal Article
The extracellular proteins of Lactobacillus acidophilus DSM 20079T display anti-inflammatory effect in both in piglets, healthy human donors and Crohn’s Disease patients
Hidalgo-Cantabrana, Claudio, Moro-García, Marco Antonio, Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Oliván, Mamen, Royo, Luis J., Riestra, Sabino, Margolles, Abelardo, Lourenço, Anália, Alonso-Arias, Rebeca, Sánchez, Borja
Published in Journal of functional foods (01.01.2020)
Published in Journal of functional foods (01.01.2020)
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Journal Article
Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm
Pérez-Pérez, Martin, Pérez-Rodríguez, Gael, Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Valencia, Alfonso, Krallinger, Martin, Lourenço, Anália
Published in Journal of cheminformatics (24.06.2019)
Published in Journal of cheminformatics (24.06.2019)
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Journal Article
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
Beghini, Francesco, McIver, Lauren J, Blanco-Míguez, Aitor, Dubois, Leonard, Asnicar, Francesco, Maharjan, Sagun, Mailyan, Ana, Manghi, Paolo, Scholz, Matthias, Thomas, Andrew Maltez, Valles-Colomer, Mireia, Weingart, George, Zhang, Yancong, Zolfo, Moreno, Huttenhower, Curtis, Franzosa, Eric A, Segata, Nicola
Published in eLife (04.05.2021)
Published in eLife (04.05.2021)
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Journal Article
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Blanco-Míguez, Aitor, Beghini, Francesco, Cumbo, Fabio, McIver, Lauren J., Thompson, Kelsey N., Zolfo, Moreno, Manghi, Paolo, Dubois, Leonard, Huang, Kun D., Thomas, Andrew Maltez, Nickols, William A., Piccinno, Gianmarco, Piperni, Elisa, Punčochář, Michal, Valles-Colomer, Mireia, Tett, Adrian, Giordano, Francesca, Davies, Richard, Wolf, Jonathan, Berry, Sarah E., Spector, Tim D., Franzosa, Eric A., Pasolli, Edoardo, Asnicar, Francesco, Huttenhower, Curtis, Segata, Nicola
Published in Nature biotechnology (01.11.2023)
Published in Nature biotechnology (01.11.2023)
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Journal Article
Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases
Ianiro, Gianluca, Punčochář, Michal, Karcher, Nicolai, Porcari, Serena, Armanini, Federica, Asnicar, Francesco, Beghini, Francesco, Blanco-Míguez, Aitor, Cumbo, Fabio, Manghi, Paolo, Pinto, Federica, Masucci, Luca, Quaranta, Gianluca, De Giorgi, Silvia, Sciumè, Giusi Desirè, Bibbò, Stefano, Del Chierico, Federica, Putignani, Lorenza, Sanguinetti, Maurizio, Gasbarrini, Antonio, Valles-Colomer, Mireia, Cammarota, Giovanni, Segata, Nicola
Published in Nature medicine (01.09.2022)
Published in Nature medicine (01.09.2022)
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Journal Article
The person-to-person transmission landscape of the gut and oral microbiomes
Valles-Colomer, Mireia, Blanco-Míguez, Aitor, Manghi, Paolo, Asnicar, Francesco, Dubois, Leonard, Golzato, Davide, Armanini, Federica, Cumbo, Fabio, Huang, Kun D., Manara, Serena, Masetti, Giulia, Pinto, Federica, Piperni, Elisa, Punčochář, Michal, Ricci, Liviana, Zolfo, Moreno, Farrant, Olivia, Goncalves, Adriana, Selma-Royo, Marta, Binetti, Ana G., Becerra, Jimmy E., Han, Bei, Lusingu, John, Amuasi, John, Amoroso, Loredana, Visconti, Alessia, Steves, Claire M., Falchi, Mario, Filosi, Michele, Tett, Adrian, Last, Anna, Xu, Qian, Qin, Nan, Qin, Huanlong, May, Jürgen, Eibach, Daniel, Corrias, Maria Valeria, Ponzoni, Mirco, Pasolli, Edoardo, Spector, Tim D., Domenici, Enrico, Collado, Maria Carmen, Segata, Nicola
Published in Nature (London) (02.02.2023)
Published in Nature (London) (02.02.2023)
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Journal Article
Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma
Lee, Karla A., Thomas, Andrew Maltez, Bolte, Laura A., Björk, Johannes R., de Ruijter, Laura Kist, Armanini, Federica, Asnicar, Francesco, Blanco-Miguez, Aitor, Board, Ruth, Calbet-Llopart, Neus, Derosa, Lisa, Dhomen, Nathalie, Brooks, Kelly, Harland, Mark, Harries, Mark, Leeming, Emily R., Lorigan, Paul, Manghi, Paolo, Marais, Richard, Newton-Bishop, Julia, Nezi, Luigi, Pinto, Federica, Potrony, Miriam, Puig, Susana, Serra-Bellver, Patricio, Shaw, Heather M., Tamburini, Sabrina, Valpione, Sara, Vijay, Amrita, Waldron, Levi, Zitvogel, Laurence, Zolfo, Moreno, de Vries, Elisabeth G. E., Nathan, Paul, Fehrmann, Rudolf S. N., Bataille, Véronique, Hospers, Geke A. P., Spector, Tim D., Weersma, Rinse K., Segata, Nicola
Published in Nature medicine (01.03.2022)
Published in Nature medicine (01.03.2022)
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Journal Article
A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche
Zepeda-Rivera, Martha, Minot, Samuel S., Bouzek, Heather, Wu, Hanrui, Blanco-Míguez, Aitor, Manghi, Paolo, Jones, Dakota S., LaCourse, Kaitlyn D., Wu, Ying, McMahon, Elsa F., Park, Soon-Nang, Lim, Yun K., Kempchinsky, Andrew G., Willis, Amy D., Cotton, Sean L., Yost, Susan C., Sicinska, Ewa, Kook, Joong-Ki, Dewhirst, Floyd E., Segata, Nicola, Bullman, Susan, Johnston, Christopher D.
Published in Nature (London) (11.04.2024)
Published in Nature (London) (11.04.2024)
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