Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models
Aite, Méziane, Chevallier, Marie, Frioux, Clémence, Trottier, Camille, Got, Jeanne, Cortés, María Paz, Mendoza, Sebastián N, Carrier, Grégory, Dameron, Olivier, Guillaudeux, Nicolas, Latorre, Mauricio, Loira, Nicolás, Markov, Gabriel V, Maass, Alejandro, Siegel, Anne
Published in PLoS computational biology (01.05.2018)
Published in PLoS computational biology (01.05.2018)
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Journal Article
Genome-Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus
Nègre, Delphine, Aite, Méziane, Belcour, Arnaud, Frioux, Clémence, Brillet-Guéguen, Loraine, Liu, Xi, Bordron, Philippe, Godfroy, Olivier, Lipinska, Agnieszka P, Leblanc, Catherine, Siegel, Anne, Dittami, Simon M, Corre, Erwan, Markov, Gabriel V
Published in Antioxidants (16.11.2019)
Published in Antioxidants (16.11.2019)
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Journal Article
Inferring Biochemical Reactions and Metabolite Structures to Understand Metabolic Pathway Drift
Belcour, Arnaud, Girard, Jean, Aite, Méziane, Delage, Ludovic, Trottier, Camille, Marteau, Charlotte, Leroux, Cédric, Dittami, Simon M., Sauleau, Pierre, Corre, Erwan, Nicolas, Jacques, Boyen, Catherine, Leblanc, Catherine, Collén, Jonas, Siegel, Anne, Markov, Gabriel V.
Published in iScience (21.02.2020)
Published in iScience (21.02.2020)
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Journal Article
Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species
Belcour, Arnaud, Frioux, Clémence, Aite, Méziane, Bretaudeau, Anthony, Hildebrand, Falk, Siegel, Anne
Published in eLife (29.12.2020)
Published in eLife (29.12.2020)
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Journal Article
Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment
Mandakovic, Dinka, Cintolesi, Ángela, Maldonado, Jonathan, Mendoza, Sebastián N., Aïte, Méziane, Gaete, Alexis, Saitua, Francisco, Allende, Miguel, Cambiazo, Verónica, Siegel, Anne, Maass, Alejandro, González, Mauricio, Latorre, Mauricio
Published in Scientific reports (27.03.2020)
Published in Scientific reports (27.03.2020)
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Journal Article
Comparative Transcriptome Analysis Provides Insights into Response of Ulva compressa to Fluctuating Salinity Conditions
Xing, Qikun, Bi, Guiqi, Cao, Min, Belcour, Arnaud, Aite, Méziane, Mo, Zhaolan, Mao, Yunxiang, Johnson, X.
Published in Journal of phycology (01.08.2021)
Published in Journal of phycology (01.08.2021)
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Journal Article
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe
Belcour, Arnaud, Got, Jeanne, Aite, Méziane, Delage, Ludovic, Collén, Jonas, Frioux, Clémence, Leblanc, Catherine, Dittami, Simon M, Blanquart, Samuel, Markov, Gabriel V, Siegel, Anne
Published in Genome research (01.06.2023)
Published in Genome research (01.06.2023)
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Journal Article
Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation
KleinJan, Hetty, Frioux, Clémence, Califano, Gianmaria, Aite, Méziane, Fremy, Enora, Karimi, Elham, Corre, Erwan, Wichard, Thomas, Siegel, Anne, Boyen, Catherine, Dittami, Simon M.
Published in Molecular ecology (01.02.2023)
Published in Molecular ecology (01.02.2023)
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Journal Article
Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines
Karimi, Elham, Geslain, Enora, Belcour, Arnaud, Frioux, Clémence, Aïte, Méziane, Siegel, Anne, Corre, Erwan, Dittami, Simon M
Published in PeerJ (San Francisco, CA) (06.05.2021)
Published in PeerJ (San Francisco, CA) (06.05.2021)
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Journal Article
Changing microbial activities during low salinity acclimation in the brown alga Ectocarpus subulatus
Kleinjan, Hetty, Caliafano, Gianmaria, Meziane Aite, Fremy, Enora, Clemence Frioux, Karimi, Elham, Corre, Erwan, Thomas, Wichard, Siegel, Anne, Boyen, Catherine, Dittami, Simon M
Published in bioRxiv (14.04.2021)
Published in bioRxiv (14.04.2021)
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Paper
Modification of the Expression of the Aquaporin ZmPIP2;5 Affects Water Relations and Plant Growth
Ding, Lei, Milhiet, Thomas, Couvreur, Valentin, Nelissen, Hilde, Meziane, Adel, Parent, Boris, Aesaert, Stijn, Van Lijsebettens, Mieke, Inzé, Dirk, Tardieu, François, Draye, Xavier, Chaumont, François
Published in Plant physiology (Bethesda) (01.04.2020)
Published in Plant physiology (Bethesda) (01.04.2020)
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Journal Article
Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis
Desert, C, Baéza, E, Aite, M, Boutin, M, Le Cam, A, Montfort, J, Houee-Bigot, M, Blum, Y, Roux, P F, Hennequet-Antier, C, Berri, C, Metayer-Coustard, S, Collin, A, Allais, S, Le Bihan, E, Causeur, D, Gondret, F, Duclos, M J, Lagarrigue, S
Published in BMC genomics (07.03.2018)
Published in BMC genomics (07.03.2018)
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Journal Article
The genome of Ectocarpus subulatus – A highly stress-tolerant brown alga
Dittami, Simon M., Corre, Erwan, Brillet-Guéguen, Loraine, Lipinska, Agnieszka P., Pontoizeau, Noé, Aite, Meziane, Avia, Komlan, Caron, Christophe, Cho, Chung Hyun, Collén, Jonas, Cormier, Alexandre, Delage, Ludovic, Doubleau, Sylvie, Frioux, Clémence, Gobet, Angélique, González-Navarrete, Irene, Groisillier, Agnès, Hervé, Cécile, Jollivet, Didier, KleinJan, Hetty, Leblanc, Catherine, Liu, Xi, Marie, Dominique, Markov, Gabriel V., Minoche, André E., Monsoor, Misharl, Pericard, Pierre, Perrineau, Marie-Mathilde, Peters, Akira F., Siegel, Anne, Siméon, Amandine, Trottier, Camille, Yoon, Hwan Su, Himmelbauer, Heinz, Boyen, Catherine, Tonon, Thierry
Published in Marine genomics (01.08.2020)
Published in Marine genomics (01.08.2020)
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Journal Article
The genome of Ectocarpus subulatus - a highly stress-tolerant brown alga
Dittami, Simon M, Corre, Erwan, Brillet-Gueguen, Loraine, Lipinska, Agnieszka P, Noe Pontoizeau, Meziane Aite, Komlan Avia, Caron, Christophe, Cho, Chung Hyun, Collen, Jonas, Cormier, Alexandre, Delage, Ludovic, Doubleau, Sylvie, Clemence Frioux, Gobet, Angelique, Gonzalez-Navarrete, Irene, Groisillier, Agnes, Herve, Cecile, Jollivet, Didier, Kleinjan, Hetty, Leblanc, Catherine, Liu, Xi, Dominique, Marie, Markov, Gabriel V, Minoche, Andre E, Misharl Monsoor, Pericard, Pierre, Marie-Mathilde Perrineau, Peters, Akira F, Siegel, Anne, Simeon, Amandine, Trottier, Camille, Hwan Su Yoon, Himmelbauer, Heinz, Boyen, Catherine, Tonon, Thierry
Published in bioRxiv (24.10.2019)
Published in bioRxiv (24.10.2019)
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Paper
Inferring biochemical reactions and metabolite structures to cope with metabolic pathway drift
Belcour, Arnaud, Girard, Jean, Aite, Méziane, Delage, Ludovic, Trottier, Camille, Marteau, Charlotte, Leroux, Cédric, Dittami, Simon, Sauleau, Pierre, Corre, Erwan, Jacques, Nicolas, Boyen, Catherine, Leblanc, Catherine, Collén, Jonas, Siegel, Anne, Markov, Gabriel
Published in bioRxiv (20.12.2018)
Published in bioRxiv (20.12.2018)
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