Protter: interactive protein feature visualization and integration with experimental proteomic data
Omasits, Ulrich, Ahrens, Christian H, Müller, Sebastian, Wollscheid, Bernd
Published in Bioinformatics (15.03.2014)
Published in Bioinformatics (15.03.2014)
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Journal Article
Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms
Turnbull, Lynne, Toyofuku, Masanori, Hynen, Amelia L., Kurosawa, Masaharu, Pessi, Gabriella, Petty, Nicola K., Osvath, Sarah R., Cárcamo-Oyarce, Gerardo, Gloag, Erin S., Shimoni, Raz, Omasits, Ulrich, Ito, Satoshi, Yap, Xinhui, Monahan, Leigh G., Cavaliere, Rosalia, Ahrens, Christian H., Charles, Ian G., Nomura, Nobuhiko, Eberl, Leo, Whitchurch, Cynthia B.
Published in Nature communications (14.04.2016)
Published in Nature communications (14.04.2016)
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Journal Article
Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach
Fuchs, Stephan, Kucklick, Martin, Lehmann, Erik, Beckmann, Alexander, Wilkens, Maya, Kolte, Baban, Mustafayeva, Ayten, Ludwig, Tobias, Diwo, Maurice, Wissing, Josef, Jänsch, Lothar, Ahrens, Christian H, Ignatova, Zoya, Engelmann, Susanne
Published in PLoS genetics (01.06.2021)
Published in PLoS genetics (01.06.2021)
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Journal Article
A Practical Guide to Small Protein Discovery and Characterization Using Mass Spectrometry
Ahrens, Christian H, Wade, Joseph T, Champion, Matthew M, Langer, Julian D
Published in Journal of bacteriology (18.01.2022)
Published in Journal of bacteriology (18.01.2022)
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Journal Article
Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system
Somerville, Vincent, Lutz, Stefanie, Schmid, Michael, Frei, Daniel, Moser, Aline, Irmler, Stefan, Frey, Jürg E, Ahrens, Christian H
Published in BMC microbiology (25.06.2019)
Published in BMC microbiology (25.06.2019)
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Journal Article
Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats
Schmid, Michael, Frei, Daniel, Patrignani, Andrea, Schlapbach, Ralph, Frey, Jürg E, Remus-Emsermann, Mitja N P, Ahrens, Christian H
Published in Nucleic acids research (28.09.2018)
Published in Nucleic acids research (28.09.2018)
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Journal Article
Generating and navigating proteome maps using mass spectrometry
Ahrens, Christian H, Aebersold, Ruedi, Brunner, Erich, Qeli, Ermir, Basler, Konrad
Published in Nature reviews. Molecular cell biology (01.11.2010)
Published in Nature reviews. Molecular cell biology (01.11.2010)
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Journal Article
Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi
Hilber-Bodmer, Maja, Schmid, Michael, Ahrens, Christian H, Freimoser, Florian M
Published in BMC microbiology (05.01.2017)
Published in BMC microbiology (05.01.2017)
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Journal Article
Volatile Organic Compounds from Native Potato-associated Pseudomonas as Potential Anti-oomycete Agents
De Vrieze, Mout, Pandey, Piyush, Bucheli, Thomas D, Varadarajan, Adithi R, Ahrens, Christian H, Weisskopf, Laure, Bailly, Aurélien
Published in Frontiers in microbiology (23.11.2015)
Published in Frontiers in microbiology (23.11.2015)
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Journal Article
A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane in Escherichia coli
Urfer, Matthias, Bogdanovic, Jasmina, Lo Monte, Fabio, Moehle, Kerstin, Zerbe, Katja, Omasits, Ulrich, Ahrens, Christian H., Pessi, Gabriella, Eberl, Leo, Robinson, John A.
Published in The Journal of biological chemistry (22.01.2016)
Published in The Journal of biological chemistry (22.01.2016)
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Journal Article
Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster
Goetze, Sandra, Qeli, Ermir, Mosimann, Christian, Staes, An, Gerrits, Bertran, Roschitzki, Bernd, Mohanty, Sonali, Niederer, Eva M, Laczko, Endre, Timmerman, Evy, Lange, Vinzenz, Hafen, Ernst, Aebersold, Ruedi, Vandekerckhove, Joël, Basler, Konrad, Ahrens, Christian H, Gevaert, Kris, Brunner, Erich
Published in PLoS biology (03.11.2009)
Published in PLoS biology (03.11.2009)
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Journal Article
Seasonal Dynamics of Glyphosate and AMPA in Lake Greifensee: Rapid Microbial Degradation in the Epilimnion During Summer
Huntscha, Sebastian, Stravs, Michael A, Bühlmann, Andreas, Ahrens, Christian H, Frey, Jürg E, Pomati, Francesco, Hollender, Juliane, Buerge, Ignaz J, Balmer, Marianne E, Poiger, Thomas
Published in Environmental science & technology (17.04.2018)
Published in Environmental science & technology (17.04.2018)
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Journal Article
Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics
Meier-Credo, Jakob, Heiniger, Benjamin, Schori, Christian, Rupprecht, Fiona, Michel, Hartmut, Ahrens, Christian H., Langer, Julian D.
Published in Analytical chemistry (Washington) (15.08.2023)
Published in Analytical chemistry (Washington) (15.08.2023)
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Journal Article
An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics
Omasits, Ulrich, Varadarajan, Adithi R, Schmid, Michael, Goetze, Sandra, Melidis, Damianos, Bourqui, Marc, Nikolayeva, Olga, Québatte, Maxime, Patrignani, Andrea, Dehio, Christoph, Frey, Juerg E, Robinson, Mark D, Wollscheid, Bernd, Ahrens, Christian H
Published in Genome research (01.12.2017)
Published in Genome research (01.12.2017)
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Journal Article
Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes
Schrimpf, Sabine P, Weiss, Manuel, Reiter, Lukas, Ahrens, Christian H, Jovanovic, Marko, Malmström, Johan, Brunner, Erich, Mohanty, Sonali, Lercher, Martin J, Hunziker, Peter E, Aebersold, Ruedi, von Mering, Christian, Hengartner, Michael O
Published in PLoS biology (01.03.2009)
Published in PLoS biology (01.03.2009)
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Journal Article
The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111
Schmid, Nadine, Pessi, Gabriella, Deng, Yinyue, Aguilar, Claudio, Carlier, Aurelien L, Grunau, Alexander, Omasits, Ulrich, Zhang, Lian-Hui, Ahrens, Christian H, Eberl, Leo
Published in PloS one (20.11.2012)
Published in PloS one (20.11.2012)
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Journal Article
Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover
Deng, Yinyue, Schmid, Nadine, Wang, Chao, Wang, Jianhe, Pessi, Gabriella, Wu, Donghui, Lee, Jasmine, Aguilar, Claudio, Ahrens, Christian H., Chang, Changqing, Song, Haiwei, Eberl, Leo, Zhang, Lian-Hui
Published in Proceedings of the National Academy of Sciences - PNAS (18.09.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (18.09.2012)
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Journal Article
Bacterial tolerance to host-exuded specialized metabolites structures the maize root microbiome
Thoenen, Lisa, Giroud, Caitlin, Kreuzer, Marco, Waelchli, Jan, Gfeller, Valentin, Deslandes-Hérold, Gabriel, Mateo, Pierre, Robert, Christelle A M, Ahrens, Christian H, Rubio-Somoza, Ignacio, Bruggmann, Rémy, Erb, Matthias, Schlaeppi, Klaus
Published in Proceedings of the National Academy of Sciences - PNAS (31.10.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (31.10.2023)
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