Blue-to-Red TagFT, mTagFT, mTsFT, and Green-to-FarRed mNeptusFT2 Proteins, Genetically Encoded True and Tandem Fluorescent Timers
Subach, Oksana M, Vlaskina, Anna V, Agapova, Yulia K, Nikolaeva, Alena Y, Anokhin, Konstantin V, Piatkevich, Kiryl D, Patrushev, Maxim V, Boyko, Konstantin M, Subach, Fedor V
Published in International journal of molecular sciences (07.02.2023)
Published in International journal of molecular sciences (07.02.2023)
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Activity modulation of the oligopeptidase B from Serratia proteamaculans by site-directed mutagenesis of amino acid residues surrounding catalytic triad histidine
Mikhailova, Anna G., Rakitina, Tatiana V., Timofeev, Vladimir I., Karlinsky, David M., Korzhenevskiy, Dmitry A., Agapova, Yulia К., Vlaskina, Anna V., Ovchinnikova, Marina V., Gorlenko, Valentina A., Rumsh, Lev D.
Published in Biochimie (01.08.2017)
Published in Biochimie (01.08.2017)
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Molecular dynamics complemented by site-directed mutagenesis reveals significant difference between the interdomain salt bridge networks stabilizing oligopeptidases B from bacteria and protozoa in their active conformations
Petrenko, Dmitry E., Mikhailova, Anna G., Timofeev, Vladimir I., Agapova, Yulia К., Karlinsky, David M., Komolov, Aleksandr S., Korzhenevskiy, Dmitry A., Vlaskina, Anna V., Rumsh, Lev D., Rakitina, Tatiana V.
Published in Journal of biomolecular structure & dynamics (01.11.2020)
Published in Journal of biomolecular structure & dynamics (01.11.2020)
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Journal Article
FNCaMP, ratiometric green calcium indicator based on mNeonGreen protein
Subach, Oksana M., Varfolomeeva, Larisa, Vlaskina, Anna V., Agapova, Yulia K., Nikolaeva, Alena Y., Piatkevich, Kiryl D., Patrushev, Maxim V., Boyko, Konstantin M., Subach, Fedor V.
Published in Biochemical and biophysical research communications (12.07.2023)
Published in Biochemical and biophysical research communications (12.07.2023)
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Journal Article
LSSmScarlet2 and LSSmScarlet3, Chemically Stable Genetically Encoded Red Fluorescent Proteins with a Large Stokes’ Shift
Subach, Oksana M., Vlaskina, Anna V., Agapova, Yulia K., Piatkevich, Kiryl D., Patrushev, Maxim V., Samygina, Valeriya R., Subach, Fedor V.
Published in International journal of molecular sciences (21.09.2022)
Published in International journal of molecular sciences (21.09.2022)
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Journal Article
How the Hinge Region Affects Interactions between the Catalytic and β-Propeller Domains in Oligopeptidase B
Timofeev, Vladimir, Gaponov, Yury, Petrenko, Dmitry, Peters, Georgy, Agapova, Yulia, Nikolaeva, Alena, Mikhailova, Anna, Rakitina, Tatiana
Published in Crystals (Basel) (01.12.2023)
Published in Crystals (Basel) (01.12.2023)
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Comparison of histone-like HU protein DNA-binding properties and HU/IHF protein sequence alignment
Kamashev, Dmitri, Agapova, Yulia, Rastorguev, Sergey, Talyzina, Anna A, Boyko, Konstantin M, Korzhenevskiy, Dmitry A, Vlaskina, Anna, Vasilov, Raif, Timofeev, Vladimir I, Rakitina, Tatiana V
Published in PloS one (13.11.2017)
Published in PloS one (13.11.2017)
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Two independent routes of post-translational chemistry in fluorescent protein FusionRed
Muslinkina, Liya, Pletnev, Vladimir Z., Pletneva, Nadya V., Ruchkin, Dmitry A., Kolesov, Danila V., Bogdanov, Alexey M., Kost, Lubov A., Rakitina, Tatiana V., Agapova, Yulia K., Shemyakina, Irina I., Chudakov, Dmitry M., Pletnev, Sergei
Published in International journal of biological macromolecules (15.07.2020)
Published in International journal of biological macromolecules (15.07.2020)
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Journal Article
The Crystal Structure of Nα-p-tosyl-lysyl Chloromethylketone-Bound Oligopeptidase B from Serratia Proteamaculans Revealed a New Type of Inhibitor Binding
Timofeev, Vladimir, Petrenko, Dmitry, Agapova, Yulia, Vlaskina, Anna, Karlinsky, David, Mikhailova, Anna, Kuranova, Inna, Rakitina, Tatiana
Published in Crystals (Basel) (01.11.2021)
Published in Crystals (Basel) (01.11.2021)
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Journal Article
YTnC2 , an improved genetically encoded green calcium indicator based on toadfish troponin C
Subach, Oksana M., Vlaskina, Anna V., Agapova, Yulia K., Nikolaeva, Alena Y., Varizhuk, Anna M., Podgorny, Oleg V., Piatkevich, Kiryl D., Patrushev, Maxim V., Boyko, Konstantin M., Subach, Fedor V.
Published in FEBS open bio (01.11.2023)
Published in FEBS open bio (01.11.2023)
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Self-Assembly and Conformational Change in the Oligomeric Structure of the Ectodomain of the TBEV E Protein Studied via X-ray, Small-Angle X-ray Scattering, and Molecular Dynamics
Konarev, Petr V, Vlaskina, Anna V, Korzhenevskiy, Dmitry, Rakitina, Tatiana V, Petrenko, Dmitry, Agapova, Yulia, Kordonskaya, Yulia, Samygina, Valeriya R
Published in Crystals (Basel) (01.12.2023)
Published in Crystals (Basel) (01.12.2023)
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Journal Article
Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold
Timofeev, Vladimir I., Altukhov, Dmitry A., Talyzina, Anna A., Agapova, Yulia K., Vlaskina, Anna V., Korzhenevskiy, Dmitry A., Kleymenov, Sergey Yu, Bocharov, Eduard V., Rakitina, Tatiana V.
Published in Journal of biomolecular structure & dynamics (10.12.2018)
Published in Journal of biomolecular structure & dynamics (10.12.2018)
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Enhanced conformational flexibility of the histone-like (HU) protein from Mycoplasma gallisepticum
Altukhov, Dmitry A., Talyzina, Anna A., Agapova, Yulia K., Vlaskina, Anna V., Korzhenevskiy, Dmitry A., Bocharov, Eduard V., Rakitina, Tatiana V., Timofeev, Vladimir I., Popov, Vladimir O.
Published in Journal of biomolecular structure & dynamics (02.01.2018)
Published in Journal of biomolecular structure & dynamics (02.01.2018)
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Comparative structural analysis of a histone-like protein from Spiroplasma melliferum in the crystalline state and in solution
Gaponov, Yury A., Timofeev, Vladimir I., Agapova, Yulia K., Bocharov, Eduard V., Shtykova, Eleonora V., Rakitina, Tatiana V.
Published in Mendeleev communications (01.11.2022)
Published in Mendeleev communications (01.11.2022)
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Journal Article
Two independent routes of post-translational chemistry in fluorescent protein FusionRed
Muslinkina, Liya, Pletnev, Vladimir Z., Pletneva, Nadya V., Ruchkin, Dmitry A., Kolesov, Danila V., Bogdanov, Alexey M., Kost, Lubov A., Rakitina, Tatiana V., Agapova, Yulia K., Shemyakina, Irina I., Chudakov, Dmitry M., Pletnev, Sergei
Published in International journal of biological macromolecules (01.07.2020)
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Published in International journal of biological macromolecules (01.07.2020)
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