Gut microbiota are related to Parkinson's disease and clinical phenotype
Scheperjans, Filip, Aho, Velma, Pereira, Pedro A. B., Koskinen, Kaisa, Paulin, Lars, Pekkonen, Eero, Haapaniemi, Elena, Kaakkola, Seppo, Eerola-Rautio, Johanna, Pohja, Marjatta, Kinnunen, Esko, Murros, Kari, Auvinen, Petri
Published in Movement disorders (01.03.2015)
Published in Movement disorders (01.03.2015)
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Journal Article
Bacterial diversity at different stages of the composting process
Partanen, Pasi, Hultman, Jenni, Paulin, Lars, Auvinen, Petri, Romantschuk, Martin
Published in BMC microbiology (29.03.2010)
Published in BMC microbiology (29.03.2010)
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Journal Article
Relationships of gut microbiota, short-chain fatty acids, inflammation, and the gut barrier in Parkinson's disease
Aho, Velma T E, Houser, Madelyn C, Pereira, Pedro A B, Chang, Jianjun, Rudi, Knut, Paulin, Lars, Hertzberg, Vicki, Auvinen, Petri, Tansey, Malú G, Scheperjans, Filip
Published in Molecular neurodegeneration (08.02.2021)
Published in Molecular neurodegeneration (08.02.2021)
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Journal Article
Transcriptome analysis unravels the biocontrol mechanism of Serratia plymuthica A30 against potato soft rot caused by Dickeya solani
Hadizadeh, Iman, Peivastegan, Bahram, Nielsen, Kåre Lehmann, Auvinen, Petri, Sipari, Nina, Pirhonen, Minna
Published in PloS one (06.09.2024)
Published in PloS one (06.09.2024)
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Journal Article
Bile microbiota in primary sclerosing cholangitis: Impact on disease progression and development of biliary dysplasia
Pereira, Pedro, Aho, Velma, Arola, Johanna, Boyd, Sonja, Jokelainen, Kalle, Paulin, Lars, Auvinen, Petri, Färkkilä, Martti
Published in PloS one (10.08.2017)
Published in PloS one (10.08.2017)
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Journal Article
Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening
Duru, Ilhan Cem, Laine, Pia, Andreevskaya, Margarita, Paulin, Lars, Kananen, Soila, Tynkkynen, Soile, Auvinen, Petri, Smolander, Olli-Pekka
Published in International journal of food microbiology (20.09.2018)
Published in International journal of food microbiology (20.09.2018)
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Journal Article
Environmental biodiversity, human microbiota, and allergy are interrelated
Hanski, Ilkka, von Hertzen, Leena, Fyhrquist, Nanna, Koskinen, Kaisa, Torppa, Kaisa, Laatikainen, Tiina, Karisola, Piia, Auvinen, Petri, Paulin, Lars, Mäkelä, Mika J, Vartiainen, Erkki, Kosunen, Timo U, Alenius, Harri, Haahtela, Tari
Published in Proceedings of the National Academy of Sciences - PNAS (22.05.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (22.05.2012)
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Journal Article
Lep-MAP: fast and accurate linkage map construction for large SNP datasets
Rastas, Pasi, Paulin, Lars, Hanski, Ilkka, Lehtonen, Rainer, Auvinen, Petri
Published in Bioinformatics (15.12.2013)
Published in Bioinformatics (15.12.2013)
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Journal Article
Notum produced by Paneth cells attenuates regeneration of aged intestinal epithelium
Pentinmikko, Nalle, Iqbal, Sharif, Mana, Miyeko, Andersson, Simon, Cognetta, Armand B., Suciu, Radu M., Roper, Jatin, Luopajärvi, Kalle, Markelin, Eino, Gopalakrishnan, Swetha, Smolander, Olli-Pekka, Naranjo, Santiago, Saarinen, Tuure, Juuti, Anne, Pietiläinen, Kirsi, Auvinen, Petri, Ristimäki, Ari, Gupta, Nitin, Tammela, Tuomas, Jacks, Tyler, Sabatini, David M., Cravatt, Benjamin F., Yilmaz, Ömer H., Katajisto, Pekka
Published in Nature (London) (01.07.2019)
Published in Nature (London) (01.07.2019)
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Journal Article
Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity
Immanen, Juha, Nieminen, Kaisa, Smolander, Olli-Pekka, Kojima, Mikiko, Alonso Serra, Juan, Koskinen, Patrik, Zhang, Jing, Elo, Annakaisa, Mähönen, Ari Pekka, Street, Nathaniel, Bhalerao, Rishikesh P., Paulin, Lars, Auvinen, Petri, Sakakibara, Hitoshi, Helariutta, Ykä
Published in Current biology (08.08.2016)
Published in Current biology (08.08.2016)
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Journal Article
BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing
Somervuo, Panu, Koskinen, Patrik, Mei, Peng, Holm, Liisa, Auvinen, Petri, Paulin, Lars
Published in BMC bioinformatics (05.07.2018)
Published in BMC bioinformatics (05.07.2018)
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Journal Article
A transcriptomic view to wounding response in young Scots pine stems
Lim, Kean-Jin, Paasela, Tanja, Harju, Anni, Venäläinen, Martti, Paulin, Lars, Auvinen, Petri, Kärkkäinen, Katri, Teeri, Teemu H.
Published in Scientific reports (12.02.2021)
Published in Scientific reports (12.02.2021)
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Journal Article
Pangenome and genomic taxonomy analyses of Leuconostoc gelidum and Leuconostoc gasicomitatum
Johansson, Per, Säde, Elina, Hultman, Jenni, Auvinen, Petri, Björkroth, Johanna
Published in BMC genomics (09.12.2022)
Published in BMC genomics (09.12.2022)
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Journal Article
Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease
Hyötyläinen, Tuulia, Jerby, Livnat, Petäjä, Elina M., Mattila, Ismo, Jäntti, Sirkku, Auvinen, Petri, Gastaldelli, Amalia, Yki-Järvinen, Hannele, Ruppin, Eytan, Orešič, Matej
Published in Nature communications (03.02.2016)
Published in Nature communications (03.02.2016)
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Journal Article
Dual-light photodynamic therapy administered daily provides a sustained antibacterial effect on biofilm and prevents Streptococcus mutans adaptation
Nikinmaa, Sakari, Alapulli, Heikki, Auvinen, Petri, Vaara, Martti, Rantala, Juha, Kankuri, Esko, Sorsa, Timo, Meurman, Jukka, Pätilä, Tommi
Published in PloS one (06.05.2020)
Published in PloS one (06.05.2020)
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Journal Article
Taxonomically and functionally diverse microbial communities in deep crystalline rocks of the Fennoscandian shield
Nyyssönen, Mari, Hultman, Jenni, Ahonen, Lasse, Kukkonen, Ilmo, Paulin, Lars, Laine, Pia, Itävaara, Merja, Auvinen, Petri
Published in The ISME Journal (01.01.2014)
Published in The ISME Journal (01.01.2014)
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Journal Article
Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis
Ojala, Teija, Kankainen, Matti, Castro, Joana, Cerca, Nuno, Edelman, Sanna, Westerlund-Wikström, Benita, Paulin, Lars, Holm, Liisa, Auvinen, Petri
Published in BMC genomics (05.12.2014)
Published in BMC genomics (05.12.2014)
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