Deep learning in pharmacogenomics: from gene regulation to patient stratification
Kalinin, Alexandr A, Higgins, Gerald A, Reamaroon, Narathip, Soroushmehr, Sayedmohammadreza, Allyn-Feuer, Ari, Dinov, Ivo D, Najarian, Kayvan, Athey, Brian D
Published in Pharmacogenomics (01.05.2018)
Published in Pharmacogenomics (01.05.2018)
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New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites
Lee, Inhan, Ajay, Subramanian S, Yook, Jong In, Kim, Hyun Sil, Hong, Su Hyung, Kim, Nam Hee, Dhanasekaran, Saravana M, Chinnaiyan, Arul M, Athey, Brian D
Published in Genome Research (01.07.2009)
Published in Genome Research (01.07.2009)
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Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks
Gao, Jing, Tarcea, V. Glenn, Karnovsky, Alla, Mirel, Barbara R., Weymouth, Terry E., Beecher, Christopher W., Cavalcoli, James D., Athey, Brian D., Omenn, Gilbert S., Burant, Charles F., Jagadish, H. V.
Published in Bioinformatics (01.04.2010)
Published in Bioinformatics (01.04.2010)
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Robust segmentation of lung in chest x-ray: applications in analysis of acute respiratory distress syndrome
Reamaroon, Narathip, Sjoding, Michael W, Derksen, Harm, Sabeti, Elyas, Gryak, Jonathan, Barbaro, Ryan P, Athey, Brian D, Najarian, Kayvan
Published in BMC medical imaging (15.10.2020)
Published in BMC medical imaging (15.10.2020)
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Ontology-based combinatorial comparative analysis of adverse events associated with killed and live influenza vaccines
Sarntivijai, Sirarat, Xiang, Zuoshuang, Shedden, Kerby A, Markel, Howard, Omenn, Gilbert S, Athey, Brian D, He, Yongqun
Published in PloS one (28.11.2012)
Published in PloS one (28.11.2012)
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Linking MedDRA®-Coded Clinical Phenotypes to Biological Mechanisms by the Ontology of Adverse Events: A Pilot Study on Tyrosine Kinase Inhibitors
Sarntivijai, Sirarat, Zhang, Shelley, Jagannathan, Desikan G., Zaman, Shadia, Burkhart, Keith K., Omenn, Gilbert S., He, Yongqun, Athey, Brian D., Abernethy, Darrell R.
Published in Drug safety (01.07.2016)
Published in Drug safety (01.07.2016)
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Journal Article
A bioinformatics analysis of the cell line nomenclature
Sarntivijai, Sirarat, Ade, Alexander S., Athey, Brian D., States, David J.
Published in Bioinformatics (01.12.2008)
Published in Bioinformatics (01.12.2008)
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Automated detection of acute respiratory distress syndrome from chest X-Rays using Directionality Measure and deep learning features
Reamaroon, Narathip, Sjoding, Michael W., Gryak, Jonathan, Athey, Brian D., Najarian, Kayvan, Derksen, Harm
Published in Computers in biology and medicine (01.07.2021)
Published in Computers in biology and medicine (01.07.2021)
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Network Reconstruction Reveals that Valproic Acid Activates Neurogenic Transcriptional Programs in Adult Brain Following Traumatic Injury
Higgins, Gerald A., Georgoff, Patrick, Nikolian, Vahagn, Allyn-Feuer, Ari, Pauls, Brian, Higgins, Richard, Athey, Brian D., Alam, Hasan E.
Published in Pharmaceutical research (01.08.2017)
Published in Pharmaceutical research (01.08.2017)
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Journal Article
Druggable Transcriptional Networks in the Human Neurogenic Epigenome
Higgins, Gerald A, Williams, Aaron M, Ade, Alex S, Alam, Hasan B, Athey, Brian D
Published in Pharmacological reviews (01.10.2019)
Published in Pharmacological reviews (01.10.2019)
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Journal Article
The epigenome, 4D nucleome and next-generation neuropsychiatric pharmacogenomics
Higgins, Gerald A, Allyn-Feuer, Ari, Handelman, Samuel, Sadee, Wolfgang, Athey, Brian D
Published in Pharmacogenomics (01.09.2015)
Published in Pharmacogenomics (01.09.2015)
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Journal Article
3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification
Kalinin, Alexandr A, Allyn-Feuer, Ari, Ade, Alex, Fon, Gordon-Victor, Meixner, Walter, Dilworth, David, Husain, Syed S, de Wet, Jeffrey R, Higgins, Gerald A, Zheng, Gen, Creekmore, Amy, Wiley, John W, Verdone, James E, Veltri, Robert W, Pienta, Kenneth J, Coffey, Donald S, Athey, Brian D, Dinov, Ivo D
Published in Scientific reports (12.09.2018)
Published in Scientific reports (12.09.2018)
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