Genome-wide sequencing for early stage lung cancer detection from plasma cell-free DNA (cfDNA): The Circulating Cancer Genome Atlas (CCGA) study
Oxnard, Geoffrey R., Maddala, Tara, Hubbell, Earl, Aravanis, Alex, Zhang, Nan, Venn, Oliver, Valouev, Anton, Shen, Ling, Patel, Shilpen, Jamshidi, Arash, Jagadeesh, Karthik, Gross, Samuel, Filippova, Darya, Beausang, John F., Liu, Minetta C., Richards, Donald A., Plevritis, Sylvia, Williams, Richard Thomas, Hartman, Anne-Renee, Swanton, Charles
Published in Journal of clinical oncology (20.06.2018)
Published in Journal of clinical oncology (20.06.2018)
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Journal Article
Prevalence of clonal hematopoiesis of indeterminate potential (CHIP) measured by an ultra-sensitive sequencing assay: Exploratory analysis of the Circulating Cancer Genome Atlas (CCGA) study
Swanton, Charles, Venn, Oliver, Aravanis, Alex, Hubbell, Earl, Maddala, Tara, Beausang, John F., Filippova, Darya, Gross, Samuel, Jamshidi, Arash, Shen, Ling, Valouev, Anton, Zhang, Nan, Bolton, Kelly L, Yeatman, Timothy Joseph, Seiden, Michael, Oxnard, Geoffrey R., Liu, Minetta C., Williams, Richard Thomas, Hartman, Anne-Renee, Baselga, Jose
Published in Journal of clinical oncology (20.05.2018)
Published in Journal of clinical oncology (20.05.2018)
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Journal Article
A DNA methylation atlas of normal human cell types
Loyfer, Netanel, Magenheim, Judith, Peretz, Ayelet, Cann, Gordon, Bredno, Joerg, Klochendler, Agnes, Fox-Fisher, Ilana, Shabi-Porat, Sapir, Hecht, Merav, Pelet, Tsuria, Moss, Joshua, Drawshy, Zeina, Amini, Hamed, Moradi, Patriss, Nagaraju, Sudharani, Bauman, Dvora, Shveiky, David, Porat, Shay, Dior, Uri, Rivkin, Gurion, Or, Omer, Hirshoren, Nir, Carmon, Einat, Pikarsky, Alon, Khalaileh, Abed, Zamir, Gideon, Grinbaum, Ronit, Abu Gazala, Machmud, Mizrahi, Ido, Shussman, Noam, Korach, Amit, Wald, Ori, Izhar, Uzi, Erez, Eldad, Yutkin, Vladimir, Samet, Yaacov, Rotnemer Golinkin, Devorah, Spalding, Kirsty L., Druid, Henrik, Arner, Peter, Shapiro, A. M. James, Grompe, Markus, Aravanis, Alex, Venn, Oliver, Jamshidi, Arash, Shemer, Ruth, Dor, Yuval, Glaser, Benjamin, Kaplan, Tommy
Published in Nature (London) (12.01.2023)
Published in Nature (London) (12.01.2023)
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Abstract 3372: Cell-free DNA (cfDNA) fragment length patterns of tumor- and blood-derived variants in participants with and without cancer
Hubbell, Earl, Maddala, Tara, Venn, Oliver, Scott, Eric, Tang, Susan, Shenoy, Archana, Aravanis, Alex
Published in Cancer research (Chicago, Ill.) (01.07.2019)
Published in Cancer research (Chicago, Ill.) (01.07.2019)
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Journal Article
Simultaneous multi-cancer detection and tissue of origin (TOO) localization using targeted bisulfite sequencing of plasma cell-free DNA (cfDNA)
Oxnard, Geoffrey R., Klein, Eric A., Seiden, Michael, Hubbell, Earl, Venn, Oliver, Jamshidi, Arash, Zhang, Nan, Beausang, John F., Gross, Samuel, Kurtzman, Kathryn N., Fung, Eric T., Yecies, Jessica, Shaknovich, Rita, Fields, Alexander P., Sekeres, Mikkael A., Richards, Donald A., Yu, Peter Paul, Aravanis, Alex, Hartman, Anne-Renee, Liu, Minetta C.
Published in Journal of global oncology (07.10.2019)
Published in Journal of global oncology (07.10.2019)
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Journal Article
The Circulating Cell-free Genome Atlas (CCGA) Study: Size selection of cell-free DNA (cfDNA) fragments
Filippova, Darya, Larson, Matthew H., Maher, M. Cyrus, Calef, Robert, Pimentel, Monica, Zhou, Yiqi, Newman, Joshua, Gross, Samuel, Nicula, Virgil, Liu, Ting-Chun, Yakym, Christopher, Berman, Jennifer, Aravanis, Alex, Jamshidi, Arash
Published in Journal of clinical oncology (20.05.2019)
Published in Journal of clinical oncology (20.05.2019)
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Journal Article
Tumor area and microscopic extent of invasion to determine circulating tumor DNA fraction in plasma and detectability of colorectal cancer (CRC)
Bredno, Joerg, Lipson, Jafi, Venn, Oliver, Gross, Samuel, Fields, Alexander P., Beausang, John F., Liu, Qinwen, Brooks, Jacqueline D., Chen, Xiaoji, Lopatin, Rita, Liu, Hai, Zhang, Nan, Zhang, Lori, Wu, Tony, Allen, Brian, Hartman, Anne-Renee, Hubbell, Earl, Jamshidi, Arash, Aravanis, Alex
Published in Journal of clinical oncology (01.02.2020)
Published in Journal of clinical oncology (01.02.2020)
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Journal Article
Performance of a blood-based test for the detection of multiple cancer types
Wolpin, Brian M., Richards, Donald A., Cohn, Allen Lee, Chen, Xiaoji, Bredno, Joerg, Kurtzman, Kathryn N., Yecies, Jessica, Shaknovich, Rita, Zhang, Nan, Tummala, Mohan K., Spigel, David R., Cosgrove, David, Wilks, Sharon, Siegel, Robert D., Fung, Eric T., Jamshidi, Arash, Aravanis, Alex, Hartman, Anne-Renee, Liu, Minetta C., Klein, Eric A.
Published in Journal of clinical oncology (01.02.2020)
Published in Journal of clinical oncology (01.02.2020)
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Journal Article
Prognostic significance of blood-based cancer detection in plasma cell-free DNA (cfDNA): Evaluating risk of overdiagnosis
Oxnard, Geoffrey R., Chen, Xiaoji, Fung, Eric T., Ma, Ting, Lipson, Jafi, Hubbell, Earl, Kurtzman, Kathryn N., Patel, Shilpen, Shaknovich, Rita, Dong, Zhao, Liu, Hai, Brooks, Jacqueline D., Spigel, David R., Seiden, Michael, Aravanis, Alex, Klein, Eric A., Hartman, Anne-Renee, Liu, Minetta C.
Published in Journal of clinical oncology (20.05.2019)
Published in Journal of clinical oncology (20.05.2019)
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Journal Article
Genome-wide cell-free DNA (cfDNA) methylation signatures and effect on tissue of origin (TOO) performance
Liu, Minetta C., Jamshidi, Arash, Venn, Oliver, Fields, Alexander P., Maher, M. Cyrus, Cann, Gordon, Amini, Hamed, Gross, Samuel, Bredno, Joerg, Miller, Meredith, Schellenberger, Jan, Kurtzman, Kathryn N., Fung, Eric T., Maddala, Tara, Oxnard, Geoffrey R., Klein, Eric A., Spigel, David R., Hartman, Anne-Renee, Aravanis, Alex, Seiden, Michael
Published in Journal of clinical oncology (20.05.2019)
Published in Journal of clinical oncology (20.05.2019)
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Journal Article
Development of a comprehensive cell-free DNA (cfDNA) assay for early detection of multiple tumor types: The Circulating Cell-free Genome Atlas (CCGA) study
Klein, Eric A., Hubbell, Earl, Maddala, Tara, Aravanis, Alex, Beausang, John F., Filippova, Darya, Gross, Samuel, Jamshidi, Arash, Kurtzman, Kathryn, Shen, Ling, Valouev, Anton, Venn, Oliver, Zhang, Nan, Smith, David A., Yeatman, Timothy Joseph, Tibshirani, Robert, Williams, Richard Thomas, Hartman, Anne-Renee, Seiden, Michael, Liu, Minetta C.
Published in Journal of clinical oncology (20.05.2018)
Published in Journal of clinical oncology (20.05.2018)
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Journal Article
Breast cancer cell-free DNA (cfDNA) profiles reflect underlying tumor biology: The Circulating Cell-Free Genome Atlas (CCGA) study
Liu, Minetta C., Maddala, Tara, Aravanis, Alex, Hubbell, Earl, Beausang, John F., Filippova, Darya, Gross, Samuel, Jamshidi, Arash, Kurtzman, Kathryn, Shen, Ling, Valouev, Anton, Venn, Oliver, Zhang, Nan, Smith, David A., Couch, Fergus, Curtis, Christina, Williams, Richard Thomas, Klein, Eric A., Hartman, Anne-Renee, Baselga, Jose
Published in Journal of clinical oncology (20.05.2018)
Published in Journal of clinical oncology (20.05.2018)
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Journal Article
Performance of a high-intensity 508-gene circulating-tumor DNA (ctDNA) assay in patients with metastatic breast, lung, and prostate cancer
Razavi, Pedram, Li, Bob T., Abida, Wassim, Aravanis, Alex, Jung, Byoungsok, Shen, Ronglai, Hou, Chenlu, De Bruijn, Ino, Gnerre, Sante, Lim, Raymond S., Reales, Dalicia, Maddala, Tara, Berger, Michael F., Riely, Gregory J., Scher, Howard I., Novotny, William F., Solit, David B., Lee, Mark, Reis-Filho, Jorge S., Baselga, Jose
Published in Journal of clinical oncology (20.06.2017)
Published in Journal of clinical oncology (20.06.2017)
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Journal Article
Performance of a high-intensity 508-gene circulating-tumor DNA (ctDNA) assay in patients with metastatic breast, lung, and prostate cancer
Razavi, Pedram, Li, Bob T., Abida, Wassim, Aravanis, Alex, Jung, Byoungsok, Shen, Ronglai, Hou, Chenlu, De Bruijn, Ino, Gnerre, Sante, Lim, Raymond S., Reales, Dalicia, Maddala, Tara, Berger, Michael F., Riely, Gregory J., Scher, Howard I., Novotny, William F., Solit, David B., Lee, Mark, Reis-Filho, Jorge S., Baselga, Jose
Published in Journal of clinical oncology (20.05.2017)
Published in Journal of clinical oncology (20.05.2017)
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Journal Article
Cell-free DNA (cfDNA) mutations from clonal hematopoiesis: Implications for interpretation of liquid biopsy tests
Razavi, Pedram, Li, Bob T., Hou, Chenlu, Shen, Ronglai, Venn, Oliver, Lim, Raymond S., Hubbell, Earl, De Bruijn, Ino, Liu, Qinwen, Vijaya Satya, Ravi, Xu, Hui, Shen, Ling, Sehnert, Amy, Maddala, Tara, Berger, Michael F., Aravanis, Alex, Reis-Filho, Jorge S., Lee, Mark, Solit, David B., Baselga, Jose
Published in Journal of clinical oncology (20.05.2017)
Published in Journal of clinical oncology (20.05.2017)
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Journal Article