Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, Anthony M, Lohse, Marc, Usadel, Bjoern
Published in Bioinformatics (Oxford, England) (01.08.2014)
Published in Bioinformatics (Oxford, England) (01.08.2014)
Get full text
Journal Article
MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis
Schwacke, Rainer, Ponce-Soto, Gabriel Y., Krause, Kirsten, Bolger, Anthony M., Arsova, Borjana, Hallab, Asis, Gruden, Kristina, Stitt, Mark, Bolger, Marie E., Usadel, Björn
Published in Molecular plant (03.06.2019)
Published in Molecular plant (03.06.2019)
Get full text
Journal Article
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing
Schmidt, Maximilian H.-W., Vogel, Alexander, Denton, Alisandra K., Istace, Benjamin, Wormit, Alexandra, van de Geest, Henri, Bolger, Marie E., Alseekh, Saleh, Maß, Janina, Pfaff, Christian, Schurr, Ulrich, Chetelat, Roger, Maumus, Florian, Aury, Jean-Marc, Koren, Sergey, Fernie, Alisdair R., Zamir, Dani, Bolger, Anthony M., Usadel, Björn
Published in The Plant cell (01.10.2017)
Published in The Plant cell (01.10.2017)
Get full text
Journal Article
Tomato facultative parthenocarpy results from SlAGAMOUS‐LIKE 6 loss of function
Klap, Chen, Yeshayahou, Ester, Bolger, Anthony M., Arazi, Tzahi, Gupta, Suresh K., Shabtai, Sara, Usadel, Björn, Salts, Yehiam, Barg, Rivka
Published in Plant biotechnology journal (01.05.2017)
Published in Plant biotechnology journal (01.05.2017)
Get full text
Journal Article
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
Lohse, Marc, Bolger, Anthony M, Nagel, Axel, Fernie, Alisdair R, Lunn, John E, Stitt, Mark, Usadel, Björn
Published in Nucleic acids research (01.07.2012)
Published in Nucleic acids research (01.07.2012)
Get full text
Journal Article
Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris
Vogel, Alexander, Schwacke, Rainer, Denton, Alisandra K, Usadel, Björn, Hollmann, Julien, Fischer, Karsten, Bolger, Anthony, Schmidt, Maximilian H-W, Bolger, Marie E, Gundlach, Heidrun, Mayer, Klaus F X, Weiss-Schneeweiss, Hanna, Temsch, Eva M, Krause, Kirsten
Published in Nature communications (28.06.2018)
Published in Nature communications (28.06.2018)
Get full text
Journal Article
Computational aspects underlying genome to phenome analysis in plants
Bolger, Anthony M., Poorter, Hendrik, Dumschott, Kathryn, Bolger, Marie E., Arend, Daniel, Osorio, Sonia, Gundlach, Heidrun, Mayer, Klaus F. X., Lange, Matthias, Scholz, Uwe, Usadel, Björn
Published in The Plant journal : for cell and molecular biology (01.01.2019)
Published in The Plant journal : for cell and molecular biology (01.01.2019)
Get full text
Journal Article
Algorithm-driven artifacts in median polish summarization of microarray data
Giorgi, Federico M, Bolger, Anthony M, Lohse, Marc, Usadel, Bjoern
Published in BMC bioinformatics (11.11.2010)
Published in BMC bioinformatics (11.11.2010)
Get full text
Journal Article
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
Koenig, Daniel, Jiménez-Gómez, José M, Kimura, Seisuke, Fulop, Daniel, Chitwood, Daniel H, Headland, Lauren R, Kumar, Ravi, Covington, Michael F, Devisetty, Upendra Kumar, Tat, An V, Tohge, Takayuki, Bolger, Anthony, Schneeberger, Korbinian, Ossowski, Stephan, Lanz, Christa, Xiong, Guangyan, Taylor-Teeples, Mallorie, Brady, Siobhan M, Pauly, Markus, Weigel, Detlef, Usadel, Björn, Fernie, Alisdair R, Peng, Jie, Sinha, Neelima R, Maloof, Julin N
Published in Proceedings of the National Academy of Sciences - PNAS (09.07.2013)
Published in Proceedings of the National Academy of Sciences - PNAS (09.07.2013)
Get full text
Journal Article
Evolution of a Complex Locus for Terpene Biosynthesis in Solanum
Matsuba, Yuki, Nguyen, Thuong T.H., Wiegert, Krystle, Falara, Vasiliki, Gonzales-Vigil, Eliana, Leong, Bryan, Schäfer, Petra, Kudma, David, Wing, Rod A., Bolger, Anthony M., Usadel, Bjöm, Tissier, Alain, Fernie, Alisdair R., Barry, Cornelius S., Picherskya, Eran
Published in The Plant cell (01.06.2013)
Published in The Plant cell (01.06.2013)
Get full text
Journal Article
De Novo Transcriptome Analysis of Durum Wheat Flag Leaves Provides New Insights Into the Regulatory Response to Elevated CO2 and High Temperature
Vicente, Rubén, Bolger, Anthony M., Martínez-Carrasco, Rafael, Pérez, Pilar, Gutiérrez, Elena, Usadel, Björn, Morcuende, Rosa
Published in Frontiers in plant science (06.12.2019)
Published in Frontiers in plant science (06.12.2019)
Get full text
Journal Article
The Arabidopsis thaliana onset of leaf death 12 mutation in the lectin receptor kinase P2K2 results in an autoimmune phenotype
Zhao, Liming, Wang, Hao-Jie, Martins, Patricia Dalcin, van Dongen, Joost T, Bolger, Anthony M, Schmidt, Romy R, Jing, Hai-Chun, Mueller-Roeber, Bernd, Schippers, Jos H M
Published in BMC plant biology (02.06.2023)
Published in BMC plant biology (02.06.2023)
Get full text
Journal Article
Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify
Dijkhuizen, Laura W., Brouwer, Paul, Bolhuis, Henk, Reichart, Gert‐Jan, Koppers, Nils, Huettel, Bruno, Bolger, Anthony M., Li, Fay‐Wei, Cheng, Shifeng, Liu, Xin, Wong, Gane Ka‐Shu, Pryer, Kathleen, Weber, Andreas, Bräutigam, Andrea, Schluepmann, Henriette
Published in The New phytologist (01.01.2018)
Published in The New phytologist (01.01.2018)
Get full text
Journal Article
Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N 2 but may denitrify
Dijkhuizen, Laura W, Brouwer, Paul, Bolhuis, Henk, Reichart, Gert-Jan, Koppers, Nils, Huettel, Bruno, Bolger, Anthony M, Li, Fay-Wei, Cheng, Shifeng, Liu, Xin, Wong, Gane Ka-Shu, Pryer, Kathleen, Weber, Andreas, Bräutigam, Andrea, Schluepmann, Henriette
Published in The New phytologist (01.01.2018)
Published in The New phytologist (01.01.2018)
Get full text
Journal Article
Identification of candidate genes for phenolics accumulation in tomato fruit
Di Matteo, Antonio, Ruggieri, Valentino, Sacco, Adriana, Rigano, Maria Manuela, Carriero, Filomena, Bolger, Anthony, Fernie, Alisdair R, Frusciante, Luigi, Barone, Amalia
Published in Plant science (Limerick) (01.05.2013)
Published in Plant science (Limerick) (01.05.2013)
Get full text
Journal Article
Fluctuating Light Interacts with Time of Day and Leaf Development Stage to Reprogram Gene Expression
Schneider, Trang, Bolger, Anthony, Zeier, Jürgen, Preiskowski, Sabine, Benes, Vladimir, Trenkamp, Sandra, Usadel, Björn, Farré, Eva M, Matsubara, Shizue
Published in Plant physiology (Bethesda) (01.04.2019)
Published in Plant physiology (Bethesda) (01.04.2019)
Get full text
Journal Article
The genome of the stress-tolerant wild tomato species Solanum pennellii
Bolger, Anthony, Scossa, Federico, Bolger, Marie E, Lanz, Christa, Maumus, Florian, Tohge, Takayuki, Quesneville, Hadi, Alseekh, Saleh, Sørensen, Iben, Lichtenstein, Gabriel, Fich, Eric A, Conte, Mariana, Keller, Heike, Schneeberger, Korbinian, Schwacke, Rainer, Ofner, Itai, Vrebalov, Julia, Xu, Yimin, Osorio, Sonia, Aflitos, Saulo Alves, Schijlen, Elio, Jiménez-Goméz, José M, Ryngajllo, Malgorzata, Kimura, Seisuke, Kumar, Ravi, Koenig, Daniel, Headland, Lauren R, Maloof, Julin N, Sinha, Neelima, van Ham, Roeland C H J, Lankhorst, René Klein, Mao, Linyong, Vogel, Alexander, Arsova, Borjana, Panstruga, Ralph, Fei, Zhangjun, Rose, Jocelyn K C, Zamir, Dani, Carrari, Fernando, Giovannoni, James J, Weigel, Detlef, Usadel, Björn, Fernie, Alisdair R
Published in Nature genetics (01.09.2014)
Published in Nature genetics (01.09.2014)
Get full text
Journal Article
In‐depth exploration of the genomic diversity in tea varieties based on a newly constructed pangenome of Camellia sinensis
Tariq, Arslan, Meng, Minghui, Jiang, Xiaohui, Bolger, Anthony, Beier, Sebastian, Buchmann, Jan P., Fernie, Alisdair R., Wen, Weiwei, Usadel, Björn
Published in The Plant journal : for cell and molecular biology (01.08.2024)
Published in The Plant journal : for cell and molecular biology (01.08.2024)
Get full text
Journal Article