Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages
Kieft, Kristopher, Zhou, Zhichao, Anderson, Rika E., Buchan, Alison, Campbell, Barbara J., Hallam, Steven J., Hess, Matthias, Sullivan, Matthew B., Walsh, David A., Roux, Simon, Anantharaman, Karthik
Published in Nature communications (09.06.2021)
Published in Nature communications (09.06.2021)
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Journal Article
Accurate and complete genomes from metagenomes
Chen, Lin-Xing, Anantharaman, Karthik, Shaiber, Alon, Eren, A Murat, Banfield, Jillian F
Published in Genome research (01.03.2020)
Published in Genome research (01.03.2020)
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Journal Article
Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations
Castelle, Cindy J., Brown, Christopher T., Anantharaman, Karthik, Probst, Alexander J., Huang, Raven H., Banfield, Jillian F.
Published in Nature reviews. Microbiology (01.10.2018)
Published in Nature reviews. Microbiology (01.10.2018)
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Journal Article
Depth-discrete metagenomics reveals the roles of microbes in biogeochemical cycling in the tropical freshwater Lake Tanganyika
Tran, Patricia Q., Bachand, Samantha C., McIntyre, Peter B., Kraemer, Benjamin M., Vadeboncoeur, Yvonne, Kimirei, Ismael A., Tamatamah, Rashid, McMahon, Katherine D., Anantharaman, Karthik
Published in The ISME Journal (01.07.2021)
Published in The ISME Journal (01.07.2021)
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Journal Article
METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks
Zhou, Zhichao, Tran, Patricia Q, Breister, Adam M, Liu, Yang, Kieft, Kristopher, Cowley, Elise S, Karaoz, Ulas, Anantharaman, Karthik
Published in Microbiome (16.02.2022)
Published in Microbiome (16.02.2022)
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Journal Article
Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system
Anantharaman, Karthik, Brown, Christopher T., Hug, Laura A., Sharon, Itai, Castelle, Cindy J., Probst, Alexander J., Thomas, Brian C., Singh, Andrea, Wilkins, Michael J., Karaoz, Ulas, Brodie, Eoin L., Williams, Kenneth H., Hubbard, Susan S., Banfield, Jillian F.
Published in Nature communications (24.10.2016)
Published in Nature communications (24.10.2016)
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Journal Article
Asgard archaea illuminate the origin of eukaryotic cellular complexity
Zaremba-Niedzwiedzka, Katarzyna, Caceres, Eva F., Saw, Jimmy H., Bäckström, Disa, Juzokaite, Lina, Vancaester, Emmelien, Seitz, Kiley W., Anantharaman, Karthik, Starnawski, Piotr, Kjeldsen, Kasper U., Stott, Matthew B., Nunoura, Takuro, Banfield, Jillian F., Schramm, Andreas, Baker, Brett J., Spang, Anja, Ettema, Thijs J. G.
Published in Nature (London) (19.01.2017)
Published in Nature (London) (19.01.2017)
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Journal Article
Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
Bouma-Gregson, Keith, Olm, Matthew R., Probst, Alexander J., Anantharaman, Karthik, Power, Mary E., Banfield, Jillian F.
Published in The ISME Journal (01.06.2019)
Published in The ISME Journal (01.06.2019)
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Journal Article
Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems
Burstein, David, Sun, Christine L., Brown, Christopher T., Sharon, Itai, Anantharaman, Karthik, Probst, Alexander J., Thomas, Brian C., Banfield, Jillian F.
Published in Nature communications (03.02.2016)
Published in Nature communications (03.02.2016)
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Journal Article
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations
Probst, Alexander J., Castelle, Cindy J., Singh, Andrea, Brown, Christopher T., Anantharaman, Karthik, Sharon, Itai, Hug, Laura A., Burstein, David, Emerson, Joanne B., Thomas, Brian C., Banfield, Jillian F.
Published in Environmental microbiology (01.02.2017)
Published in Environmental microbiology (01.02.2017)
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Journal Article
Megaphages infect Prevotella and variants are widespread in gut microbiomes
Devoto, Audra E., Santini, Joanne M., Olm, Matthew R., Anantharaman, Karthik, Munk, Patrick, Tung, Jenny, Archie, Elizabeth A., Turnbaugh, Peter J., Seed, Kimberley D., Blekhman, Ran, Aarestrup, Frank M., Thomas, Brian C., Banfield, Jillian F.
Published in Nature microbiology (01.04.2019)
Published in Nature microbiology (01.04.2019)
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Journal Article
Gammaproteobacteria mediating utilization of methyl-, sulfur- and petroleum organic compounds in deep ocean hydrothermal plumes
Zhou, Zhichao, Liu, Yang, Pan, Jie, Cron, Brandi R., Toner, Brandy M., Anantharaman, Karthik, Breier, John A., Dick, Gregory J., Li, Meng
Published in The ISME Journal (01.12.2020)
Published in The ISME Journal (01.12.2020)
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Journal Article
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
Matheus Carnevali, Paula B., Schulz, Frederik, Castelle, Cindy J., Kantor, Rose S., Shih, Patrick M., Sharon, Itai, Santini, Joanne M., Olm, Matthew R., Amano, Yuki, Thomas, Brian C., Anantharaman, Karthik, Burstein, David, Becraft, Eric D., Stepanauskas, Ramunas, Woyke, Tanja, Banfield, Jillian F.
Published in Nature communications (28.01.2019)
Published in Nature communications (28.01.2019)
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