Comparative genomics of the neglected human malaria parasite Plasmodium vivax
Sargeant, Tobias J, Gueye, Amy H, Salzberg, Steven L, Essien, Kobby, Kooij, Taco W. A, Angiuoli, Samuel V, del Portillo, Hernando A, Gardner, Malcolm J, Nene, Vish, Korsinczky, Michael, Stoeckert, Christian J, Meyer, Esmeralda V.-S, Wortman, Jennifer R, Barnwell, John W, Yamamoto, Marcio M, Crabb, Brendan S, Ralph, Stuart A, Sullivan, Steven A, Coulson, Richard M. R, Merino, Emilio F, Bidwell, Shelby L, Adams, John H, Ren, Qinghu, Fernandez-Becerra, Carmen, Fraser-Liggett, Claire M, Kang'a, Simon, Guo, Xiang, Cheng, Qin, Crabtree, Jonathan, Hoffman, Stephen L, Silva, Joana C, Galinski, Mary R, Caler, Elisabet, Amedeo, Paolo, Paulsen, Ian, Feldblyum, Tamara V, Gilson, Paul R, White, Owen, Lorenzi, Hernan, Carlton, Jane M
Published in Nature (London) (09.10.2008)
Published in Nature (London) (09.10.2008)
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Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
Eisen, Jonathan A, Coyne, Robert S, Wu, Martin, Wu, Dongying, Thiagarajan, Mathangi, Wortman, Jennifer R, Badger, Jonathan H, Ren, Qinghu, Amedeo, Paolo, Jones, Kristie M, Tallon, Luke J, Delcher, Arthur L, Salzberg, Steven L, Silva, Joana C, Haas, Brian J, Majoros, William H, Farzad, Maryam, Carlton, Jane M, Smith, Jr, Roger K, Garg, Jyoti, Pearlman, Ronald E, Karrer, Kathleen M, Sun, Lei, Manning, Gerard, Elde, Nels C, Turkewitz, Aaron P, Asai, David J, Wilkes, David E, Wang, Yufeng, Cai, Hong, Collins, Kathleen, Stewart, B Andrew, Lee, Suzanne R, Wilamowska, Katarzyna, Weinberg, Zasha, Ruzzo, Walter L, Wloga, Dorota, Gaertig, Jacek, Frankel, Joseph, Tsao, Che-Chia, Gorovsky, Martin A, Keeling, Patrick J, Waller, Ross F, Patron, Nicola J, Cherry, J Michael, Stover, Nicholas A, Krieger, Cynthia J, del Toro, Christina, Ryder, Hilary F, Williamson, Sondra C, Barbeau, Rebecca A, Hamilton, Eileen P, Orias, Eduardo
Published in PLoS biology (01.09.2006)
Published in PLoS biology (01.09.2006)
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Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
Fedorova, Natalie D, Khaldi, Nora, Joardar, Vinita S, Maiti, Rama, Amedeo, Paolo, Anderson, Michael J, Crabtree, Jonathan, Silva, Joana C, Badger, Jonathan H, Albarraq, Ahmed, Angiuoli, Sam, Bussey, Howard, Bowyer, Paul, Cotty, Peter J, Dyer, Paul S, Egan, Amy, Galens, Kevin, Fraser-Liggett, Claire M, Haas, Brian J, Inman, Jason M, Kent, Richard, Lemieux, Sebastien, Malavazi, Iran, Orvis, Joshua, Roemer, Terry, Ronning, Catherine M, Sundaram, Jaideep P, Sutton, Granger, Turner, Geoff, Venter, J Craig, White, Owen R, Whitty, Brett R, Youngman, Phil, Wolfe, Kenneth H, Goldman, Gustavo H, Wortman, Jennifer R, Jiang, Bo, Denning, David W, Nierman, William C
Published in PLoS genetics (01.04.2008)
Published in PLoS genetics (01.04.2008)
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Sequencing and analysis of globally obtained human parainfluenza viruses 1 and 3 genomes
Bose, Michael E, Shrivastava, Susmita, He, Jie, Nelson, Martha I, Bera, Jayati, Fedorova, Nadia, Halpin, Rebecca, Town, Christopher D, Lorenzi, Hernan A, Amedeo, Paolo, Gupta, Neha, Noyola, Daniel E, Videla, Cristina, Kok, Tuckweng, Buys, Amelia, Venter, Marietjie, Vabret, Astrid, Cordey, Samuel, Henrickson, Kelly J
Published in PloS one (18.07.2019)
Published in PloS one (18.07.2019)
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Whole genome sequencing, variant analysis, phylogenetics, and deep sequencing of Zika virus strains
Shrivastava, Susmita, Puri, Vinita, Dilley, Kari A., Ngouajio, Erica, Shifflett, Jessica, Oldfield, Lauren M., Fedorova, Nadia B., Hu, Lihui, Williams, Torrey, Durbin, Alan, Amedeo, Paolo, Rashid, Sujatha, Shabman, Reed S., Pickett, Brett E.
Published in Scientific reports (26.10.2018)
Published in Scientific reports (26.10.2018)
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The genome of the protist parasite Entamoeba histolytica
Loftus, Brendan, Anderson, Iain, Davies, Rob, Alsmark, U. Cecilia M, Samuelson, John, Amedeo, Paolo, Roncaglia, Paola, Berriman, Matt, Hirt, Robert P, Mann, Barbara J, Nozaki, Tomo, Suh, Bernard, Pop, Mihai, Duchene, Michael, Ackers, John, Tannich, Egbert, Leippe, Matthias, Hofer, Margit, Bruchhaus, Iris, Willhoeft, Ute, Bhattacharya, Alok, Chillingworth, Tracey, Churcher, Carol, Hance, Zahra, Harris, Barbara, Harris, David, Jagels, Kay, Moule, Sharon, Mungall, Karen, Ormond, Doug, Squares, Rob, Whitehead, Sally, Quail, Michael A, Rabbinowitsch, Ester, Norbertczak, Halina, Price, Claire, Wang, Zheng, Guillén, Nancy, Gilchrist, Carol, Stroup, Suzanne E, Bhattacharya, Sudha, Lohia, Anuradha, Foster, Peter G, Sicheritz-Ponten, Thomas, Weber, Christian, Singh, Upinder, Mukherjee, Chandrama, El-Sayed, Najib M, Petri, William A, Clark, C. Graham, Embley, T. Martin, Barrell, Bart, Fraser, Claire M, Hall, Neil
Published in Nature (24.02.2005)
Published in Nature (24.02.2005)
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Multivariate time-series analysis of biomarkers from a dengue cohort offers new approaches for diagnosis and prognosis
Vasey, Baptiste, Shankar, Anuraj H, Herrera, Bobby Brooke, Becerra, Aniuska, Xhaja, Kris, Echenagucia, Marion, Machado, Sara R, Caicedo, Diana, Miller, John, Amedeo, Paolo, Naumova, Elena N, Bosch, Irene
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Published in PLoS neglected tropical diseases (01.06.2020)
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Differing epidemiological dynamics of Chikungunya virus in the Americas during the 2014-2015 epidemic
Tan, Yi, Pickett, Brett E, Shrivastava, Susmita, Gresh, Lionel, Balmaseda, Angel, Amedeo, Paolo, Hu, Lihui, Puri, Vinita, Fedorova, Nadia B, Halpin, Rebecca A, LaPointe, Matthew P, Cone, Marshall R, Heberlein-Larson, Lea, Kramer, Laura D, Ciota, Alexander T, Gordon, Aubree, Shabman, Reed S, Das, Suman R, Harris, Eva
Published in PLoS neglected tropical diseases (30.07.2018)
Published in PLoS neglected tropical diseases (30.07.2018)
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New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information
Lorenzi, Hernan A, Puiu, Daniela, Miller, Jason R, Brinkac, Lauren M, Amedeo, Paolo, Hall, Neil, Caler, Elisabet V
Published in PLoS neglected tropical diseases (15.06.2010)
Published in PLoS neglected tropical diseases (15.06.2010)
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Disruption of the plant gene MOM releases transcriptional silencing of methylated genes
Habu, Yoshiki, Amedeo, Paolo, Afsar, Karin, Scheid, Ortrun Mittelsten, Paszkowski, Jerzy
Published in Nature (London) (11.05.2000)
Published in Nature (London) (11.05.2000)
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Activation of an AP1-Like Transcription Factor of the Maize Pathogen Cochliobolus heterostrophus in Response to Oxidative Stress and Plant Signals
Lev, Sophie, Hadar, Ruthi, Amedeo, Paolo, Baker, Scott E, Yoder, O C, Horwitz, Benjamin A
Published in Eukaryotic Cell (01.02.2005)
Published in Eukaryotic Cell (01.02.2005)
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Feasibility and clinical impact of out-of-ICU noninvasive respiratory support in patients with COVID-19-related pneumonia
Franco, Cosimo, Facciolongo, Nicola, Tonelli, Roberto, Dongilli, Roberto, Vianello, Andrea, Pisani, Lara, Scala, Raffaele, Malerba, Mario, Carlucci, Annalisa, Negri, Emanuele Alberto, Spoladore, Greta, Arcaro, Giovanna, Tillio, Paolo Amedeo, Lastoria, Cinzia, Schifino, Gioachino, Tabbì, Luca, Guidelli, Luca, Guaraldi, Giovanni, Ranieri, V Marco, Clini, Enrico, Nava, Stefano
Published in European Respiratory Journal (01.11.2020)
Published in European Respiratory Journal (01.11.2020)
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Interrelationship among Obstructive Sleep Apnea, Renal Function and Survival: A Cohort Study
Pochetti, Patrizia, Azzolina, Danila, Ragnoli, Beatrice, Tillio, Paolo Amedeo, Cantaluppi, Vincenzo, Malerba, Mario
Published in International journal of environmental research and public health (08.07.2020)
Published in International journal of environmental research and public health (08.07.2020)
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Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics
Arensburger, Peter, Megy, Karine, Waterhouse, Robert M, Abrudan, Jenica, Amedeo, Paolo, Antelo, Beatriz, Bartholomay, Lyric, Bidwell, Shelby, Caler, Elisabet, Camara, Francisco, Campbell, Corey L, Campbell, Kathryn S, Casola, Claudio, Castro, Marta T, Chandramouliswaran, Ishwar, Chapman, Sinéad B, Christley, Scott, Costas, Javier, Eisenstadt, Eric, Feschotte, Cedric, Fraser-Liggett, Claire, Guigo, Roderic, Haas, Brian, Hammond, Martin, Hansson, Bill S, Hemingway, Janet, Hill, Sharon R, Howarth, Clint, Ignell, Rickard, Kennedy, Ryan C, Kodira, Chinnappa D, Lobo, Neil F, Mao, Chunhong, Mayhew, George, Michel, Kristin, Mori, Akio, Liu, Nannan, Naveira, Horacio, Nene, Vishvanath, Nguyen, Nam, Pearson, Matthew D, Pritham, Ellen J, Puiu, Daniela, Qi, Yumin, Ranson, Hilary, Ribeiro, Jose M.C, Roberston, Hugh M, Severson, David W, Shumway, Martin, Stanke, Mario, Strausberg, Robert L, Sun, Cheng, Sutton, Granger, Tu, Zhijian (Jake), Tubio, Jose Manuel C, Unger, Maria F, Vanlandingham, Dana L, Vilella, Albert J, White, Owen, White, Jared R, Wondji, Charles S, Wortman, Jennifer, Zdobnov, Evgeny M, Birren, Bruce, Christensen, Bruce M, Collins, Frank H, Cornel, Anthony, Dimopoulos, George, Hannick, Linda I, Higgs, Stephen, Lanzaro, Gregory C, Lawson, Daniel, Lee, Norman H, Muskavitch, Marc A.T, Raikhel, Alexander S, Atkinson, Peter W
Published in Science (American Association for the Advancement of Science) (01.10.2010)
Published in Science (American Association for the Advancement of Science) (01.10.2010)
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Genome Sequence of Aedes aegypti, a Major Arbovirus Vector
Nene, Vishvanath, Wortman, Jennifer R., Lawson, Daniel, Haas, Brian, Kodira, Chinnappa, Tu, Zhijian (Jake), Loftus, Brendan, Xi, Zhiyong, Megy, Karyn, Grabherr, Manfred, Ren, Quinghu, Zdobnov, Evgeny M., Lobo, Neil F., Campbell, Kathryn S., Brown, Susan E., Bonaldo, Maria F., Zhu, Jingsong, Sinkins, Steven P., Hogenkamp, David G., Amedeo, Paolo, Arensburger, Peter, Atkinson, Peter W., Bidwell, Shelby, Biedler, Jim, Birney, Ewan, Bruggner, Robert V., Costas, Javier, Coy, Monique R., Crabtree, Jonathan, Crawford, Matt, deBruyn, Becky, DeCaprio, David, Eiglmeier, Karin, Eisenstadt, Eric, El-Dorry, Hamza, Gelbart, William M., Gomes, Suely L., Hammond, Martin, Hannick, Linda I., Hogan, James R., Holmes, Michael H., Jaffe, David, Johnston, J. Spencer, Kennedy, Ryan C., Koo, Hean, Kravitz, Saul, Kriventseva, Evgenia V., Kulp, David, LaButti, Kurt, Lee, Eduardo, Li, Song, Lovin, Diane D., Mao, Chunhong, Mauceli, Evan, Menck, Carlos F. M., Miller, Jason R., Montgomery, Philip, Mori, Akio, Nascimento, Ana L., Naveira, Horacio F., Nusbaum, Chad, O'Leary, Sinéad, Orvis, Joshua, Pertea, Mihaela, Quesneville, Hadi, Reidenbach, Kyanne R., Rogers, Yu-Hui, Roth, Charles W., Schneider, Jennifer R., Schatz, Michael, Shumway, Martin, Stanke, Mario, Stinson, Eric O., Tubio, Jose M. C., VanZee, Janice P., Verjovski-Almeida, Sergio, Werner, Doreen, White, Owen, Wyder, Stefan, Zeng, Qiandong, Zhao, Qi, Zhao, Yongmei, Hill, Catherine A., Raikhel, Alexander S., Soares, Marcelo B., Knudson, Dennis L., Lee, Norman H., Galagan, James, Salzberg, Steven L., Paulsen, Ian T., Dimopoulos, George, Collins, Frank H., Birren, Bruce, Fraser-Liggett, Claire M., Severson, David W.
Published in Science (American Association for the Advancement of Science) (22.06.2007)
Published in Science (American Association for the Advancement of Science) (22.06.2007)
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Draft Genome of the Filarial Nematode Parasite Brugia malayi
Ghedin, Elodie, Wang, Shiliang, Spiro, David, Caler, Elisabet, Zhao, Qi, Crabtree, Jonathan, Allen, Jonathan E., Delcher, Arthur L., Guiliano, David B., Miranda-Saavedra, Diego, Angiuoli, Samuel V., Creasy, Todd, Amedeo, Paolo, Haas, Brian, El-Sayed, Najib M., Wortman, Jennifer R., Feldblyum, Tamara, Tallon, Luke, Schatz, Michael, Shumway, Martin, Koo, Hean, Salzberg, Steven L., Schobel, Seth, Pertea, Mihaela, Pop, Mihai, White, Owen, Barton, Geoffrey J., Carlow, Clotilde K. S., Crawford, Michael J., Daub, Jennifer, Dimmic, Matthew W., Estes, Chris F., Foster, Jeremy M., Ganatra, Mehul, Gregory, William F., Johnson, Nicholas M., Jin, Jinming, Komuniecki, Richard, Korf, Ian, Kumar, Sanjay, Laney, Sandra, Li, Ben-Wen, Li, Wen, Lindblom, Tim H., Lustigman, Sara, Ma, Dong, Maina, Claude V., Martin, David M. A., McCarter, James P., McReynolds, Larry, Mitreva, Makedonka, Nutman, Thomas B., Parkinson, John, Peregrín-Alvarez, José M., Poole, Catherine, Ren, Qinghu, Saunders, Lori, Sluder, Ann E., Smith, Katherine, Stanke, Mario, Unnasch, Thomas R., Ware, Jenna, Wei, Aguan D., Weil, Gary, Williams, Deryck J., Zhang, Yinhua, Williams, Steven A., Fraser-Liggett, Claire, Slatko, Barton, Blaxter, Mark L., Scott, Alan L.
Published in Science (American Association for the Advancement of Science) (21.09.2007)
Published in Science (American Association for the Advancement of Science) (21.09.2007)
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Simple Parameters from Complete Blood Count Predict In-Hospital Mortality in COVID-19
Azzolina, Danila, Hayden, Eyal, Gaidano, Gianluca, Pirisi, Mario, Angilletta, Roberto, Arioli, Roberto, Avino, Gianluca, Balbo, Piero Emilio, Baldon, Giulia, Baorda, Francesca, Barbero, Emanuela, Baricich, Alessio, Barone-Adesi, Francesco, Battistini, Sofia, Beltrame, Michela, Bertolin, Stephanie, Bertolotti, Marinella, Betti, Marta, Bobbio, Flavio, Boffano, Paolo, Boglione, Lucio, Borrè, Silvio, Cammarata, Edoardo, Cantaluppi, Vincenzo, Capponi, Andrea, Carriero, Alessandro, Casciaro, Giuseppe Francesco, Castello, Luigi Mario, Ceruti, Federico, Chichino, Guido, Cittone, Micol Giulia, Colombo, Crizia, Comi, Cristoforo, Croce, Eleonora, Daffara, Tommaso, Della Corte, Francesco, De Vecchi, Simona, Dianzani, Umberto, Esposto, Elia, Faggiano, Fabrizio, Falaschi, Zeno, Ferrante, Daniela, Ferrero, Alice, Gagliardi, Ileana, Galbiati, Alessandra, Gallo, Silvia, Garavelli, Pietro Luigi, Gardino, Clara Ada, Garzaro, Massimiliano, Gavelli, Francesco, Giacomini, Greta Maria, Giacone, Irene, Giai Via, Valentina, Gironi, Laura Cristina, Gramaglia, Carla, Grisafi, Leonardo, Inserra, Ilaria, Invernizzi, Marco, Krengli, Marco, Labella, Emanuela, Landi, Irene Cecilia, Landi, Raffaella, Leone, Ilaria, Lorenzini, Luca, Maconi, Antonio, Manfredi, Giulia Francesca, Martelli, Maria, Marzari, Letizia, Marzullo, Paolo, Mennuni, Marco, Mussa, Marco, Nerici, Ilaria, Nuzzo, Alessandro, Padelli, Samuel Alberto, Panella, Massimiliano, Parisini, Andrea, Paschè, Alessio, Patrucco, Filippo, Patti, Giuseppe, Percivale, Ilaria, Ragazzoni, Luca, Re, Roberta, Rigamonti, Cristina, Rognoni, Andrea, Roveta, Annalisa, Santagostino, Matteo, Saraceno, Massimo, Savoia, Paola, Sciarra, Marco, Scotti, Lorenza, Spinoni, Enrico, Tarantino, Vanessa, Tillio, Paolo Amedeo, Tonello, Stelvio, Vaschetto, Rosanna, Vassia, Veronica, Zagaria, Domenico, Zavattaro, Elisa, Zeppegno, Patrizia, Sainaghi, Pier Paolo
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Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans
Loftus, Brendan J, Fung, Eula, Roncaglia, Paola, Rowley, Don, Amedeo, Paolo, Bruno, Dan, Vamathevan, Jessica, Miranda, Molly, Anderson, Iain J, Fraser, James A, Allen, Jonathan E, Bosdet, Ian E, Brent, Michael R, Chiu, Readman, Doering, Tamara L, Donlin, Maureen J, D'Souza, Cletus A, Fox, Deborah S, Grinberg, Viktoriya, Fu, Jianmin, Fukushima, Marilyn, Haas, Brian J, Huang, James C, Janbon, Guilhem, Jones, Steven J. M, Koo, Hean L, Krzywinski, Martin I, Kwon-Chung, June K, Lengeler, Klaus B, Maiti, Rama, Marra, Marco A, Marra, Robert E, Mathewson, Carrie A, Mitchell, Thomas G, Pertea, Mihaela, Riggs, Florenta R, Salzberg, Steven L, Schein, Jacqueline E, Shvartsbeyn, Alla, Shin, Heesun, Shumway, Martin, Specht, Charles A, Suh, Bernard B, Tenney, Aaron, Utterback, Terry R, Wickes, Brian L, Wortman, Jennifer R, Wye, Natasja H, Kronstad, James W, Lodge, Jennifer K, Heitman, Joseph, Davis, Ronald W, Fraser, Claire M, Hyman, Richard W
Published in Science (American Association for the Advancement of Science) (25.02.2005)
Published in Science (American Association for the Advancement of Science) (25.02.2005)
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Evolutionary dynamics and molecular epidemiology of West Nile virus in New York State: 1999–2015
Bialosuknia, Sean M, Tan, Yi, Zink, Steven D, Koetzner, Cheri A, Maffei, Joseph G, Halpin, Rebecca A, Mueller, Emmi A, Novotny, Mark, Shilts, Meghan, Fedorova, Nadia B, Amedeo, Paolo, Das, Suman R, Pickett, Brett, Kramer, Laura D, Ciota, Alexander T
Published in Virus evolution (01.07.2019)
Published in Virus evolution (01.07.2019)
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Erratum: Evolutionary dynamics and molecular epidemiology of West Nile virus in New York State: 1999-2015
Bialosuknia, Sean M, Tan, Yi, Zink, Steven D, Koetzner, Cheri A, Maffei, Joseph G, Halpin, Rebecca A, Mueller, Emmi A, Novotny, Mark, Shilts, Meghan, Fedorova, Nadia B, Amedeo, Paolo, Das, Suman R, Pickett, Brett, Kramer, Laura D, Ciota, Alexander T
Published in Virus evolution (01.07.2019)
Published in Virus evolution (01.07.2019)
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