A fast adaptive algorithm for computing whole-genome homology maps
Jain, Chirag, Koren, Sergey, Dilthey, Alexander, Phillippy, Adam M, Aluru, Srinivas
Published in Bioinformatics (01.09.2018)
Published in Bioinformatics (01.09.2018)
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Journal Article
Fast alignment and preprocessing of chromatin profiles with Chromap
Zhang, Haowen, Song, Li, Wang, Xiaotao, Cheng, Haoyu, Wang, Chenfei, Meyer, Clifford A., Liu, Tao, Tang, Ming, Aluru, Srinivas, Yue, Feng, Liu, X. Shirley, Li, Heng
Published in Nature communications (12.11.2021)
Published in Nature communications (12.11.2021)
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Journal Article
RD26 mediates crosstalk between drought and brassinosteroid signalling pathways
Ye, Huaxun, Liu, Sanzhen, Tang, Buyun, Chen, Jiani, Xie, Zhouli, Nolan, Trevor M., Jiang, Hao, Guo, Hongqing, Lin, Hung-Ying, Li, Lei, Wang, Yanqun, Tong, Hongning, Zhang, Mingcai, Chu, Chengcai, Li, Zhaohu, Aluru, Maneesha, Aluru, Srinivas, Schnable, Patrick S., Yin, Yanhai
Published in Nature communications (24.02.2017)
Published in Nature communications (24.02.2017)
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Journal Article
brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana
Yu, Xiaofei, Li, Lei, Zola, Jaroslaw, Aluru, Maneesha, Ye, Huaxun, Foudree, Andrew, Guo, Hongqing, Anderson, Sarah, Aluru, Srinivas, Liu, Peng, Rodermel, Steve, Yin, Yanhai
Published in The Plant journal : for cell and molecular biology (01.02.2011)
Published in The Plant journal : for cell and molecular biology (01.02.2011)
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Journal Article
A greedy alignment-free distance estimator for phylogenetic inference
Thankachan, Sharma V, Chockalingam, Sriram P, Liu, Yongchao, Krishnan, Ambujam, Aluru, Srinivas
Published in BMC bioinformatics (07.06.2017)
Published in BMC bioinformatics (07.06.2017)
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Journal Article
An SVM-based method for assessment of transcription factor-DNA complex models
Corona, Rosario I, Sudarshan, Sanjana, Aluru, Srinivas, Guo, Jun-Tao
Published in BMC bioinformatics (21.12.2018)
Published in BMC bioinformatics (21.12.2018)
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Journal Article
ALFRED: A Practical Method for Alignment-Free Distance Computation
Thankachan, Sharma V, Chockalingam, Sriram P, Liu, Yongchao, Apostolico, Alberto, Aluru, Srinivas
Published in Journal of computational biology (01.06.2016)
Published in Journal of computational biology (01.06.2016)
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Journal Article
Fast and accurate construction of ultra-dense consensus genetic maps using evolution strategy optimization
Mester, David, Ronin, Yefim, Schnable, Patrick, Aluru, Srinivas, Korol, Abraham
Published in PloS one (13.04.2015)
Published in PloS one (13.04.2015)
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Journal Article
Parallel globally optimal structure learning of Bayesian networks
NIKOLOVA, Olga, ZOLA, Jaroslaw, ALURU, Srinivas
Published in Journal of parallel and distributed computing (01.08.2013)
Published in Journal of parallel and distributed computing (01.08.2013)
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Journal Article
Efficient detection of viral transmissions with Next-Generation Sequencing data
Rytsareva, Inna, Campo, David S, Zheng, Yueli, Sims, Seth, Thankachan, Sharma V, Tetik, Cansu, Chirag, Jain, Chockalingam, Sriram P, Sue, Amanda, Aluru, Srinivas, Khudyakov, Yury
Published in BMC genomics (24.05.2017)
Published in BMC genomics (24.05.2017)
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Journal Article
PCAP: a whole-genome assembly program
Huang, Xiaoqiu, Wang, Jianmin, Aluru, Srinivas, Yang, Shiaw-Pyng, Hillier, LaDeana
Published in Genome research (01.09.2003)
Published in Genome research (01.09.2003)
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Journal Article
Parallel short sequence assembly of transcriptomes
Jackson, Benjamin G, Schnable, Patrick S, Aluru, Srinivas
Published in BMC bioinformatics (30.01.2009)
Published in BMC bioinformatics (30.01.2009)
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Journal Article
Editorial: From the New Editor-in-Chief
Aluru, Srinivas
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.11.2021)
Published in IEEE/ACM transactions on computational biology and bioinformatics (01.11.2021)
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Journal Article