Ensembl 2018
Zerbino, Daniel R, Achuthan, Premanand, Akanni, Wasiu, Amode, M Ridwan, Barrell, Daniel, Bhai, Jyothish, Billis, Konstantinos, Cummins, Carla, Gall, Astrid, Girón, Carlos García, Gil, Laurent, Gordon, Leo, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, To, Jimmy Kiang, Laird, Matthew R, Lavidas, Ilias, Liu, Zhicheng, Loveland, Jane E, Maurel, Thomas, McLaren, William, Moore, Benjamin, Mudge, Jonathan, Murphy, Daniel N, Newman, Victoria, Nuhn, Michael, Ogeh, Denye, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Schuilenburg, Helen, Sheppard, Dan, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Zadissa, Amonida, Frankish, Adam, Hunt, Sarah E, Kostadima, Myrto, Langridge, Nicholas, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Dan M, Trevanion, Stephen J, Aken, Bronwen L, Cunningham, Fiona, Yates, Andrew, Flicek, Paul
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Ensembl 2016
Yates, Andrew, Akanni, Wasiu, Amode, M Ridwan, Barrell, Daniel, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Johnson, Nathan, Juettemann, Thomas, Keenan, Stephen, Lavidas, Ilias, Martin, Fergal J, Maurel, Thomas, McLaren, William, Murphy, Daniel N, Nag, Rishi, Nuhn, Michael, Parker, Anne, Patricio, Mateus, Pignatelli, Miguel, Rahtz, Matthew, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P, Zadissa, Amonida, Birney, Ewan, Harrow, Jennifer, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Spudich, Giulietta, Trevanion, Stephen J, Cunningham, Fiona, Aken, Bronwen L, Zerbino, Daniel R, Flicek, Paul
Published in Nucleic acids research (04.01.2016)
Published in Nucleic acids research (04.01.2016)
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Ensembl 2017
Aken, Bronwen L, Achuthan, Premanand, Akanni, Wasiu, Amode, M Ridwan, Bernsdorff, Friederike, Bhai, Jyothish, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Juettemann, Thomas, Keenan, Stephen, Laird, Matthew R, Lavidas, Ilias, Maurel, Thomas, McLaren, William, Moore, Benjamin, Murphy, Daniel N, Nag, Rishi, Newman, Victoria, Nuhn, Michael, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Sheppard, Daniel, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Wilder, Steven P, Zadissa, Amonida, Kostadima, Myrto, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M, Trevanion, Stephen J, Cunningham, Fiona, Yates, Andrew, Zerbino, Daniel R, Flicek, Paul
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Ensembl 2015
Cunningham, Fiona, Amode, M Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E, Janacek, Sophie H, Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K, Keenan, Stephen, Martin, Fergal J, Maurel, Thomas, McLaren, William, Murphy, Daniel N, Nag, Rishi, Overduin, Bert, Parker, Anne, Patricio, Mateus, Perry, Emily, Pignatelli, Miguel, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P, Zadissa, Amonida, Aken, Bronwen L, Birney, Ewan, Harrow, Jennifer, Kinsella, Rhoda, Muffato, Matthieu, Ruffier, Magali, Searle, Stephen M J, Spudich, Giulietta, Trevanion, Stephen J, Yates, Andy, Zerbino, Daniel R, Flicek, Paul
Published in Nucleic acids research (28.01.2015)
Published in Nucleic acids research (28.01.2015)
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Ensembl 2014
Flicek, Paul, Amode, M Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah, Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K, Keenan, Stephen, Kulesha, Eugene, Martin, Fergal J, Maurel, Thomas, McLaren, William M, Murphy, Daniel N, Nag, Rishi, Overduin, Bert, Pignatelli, Miguel, Pritchard, Bethan, Pritchard, Emily, Riat, Harpreet S, Ruffier, Magali, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Trevanion, Stephen J, Vullo, Alessandro, Wilder, Steven P, Wilson, Mark, Zadissa, Amonida, Aken, Bronwen L, Birney, Ewan, Cunningham, Fiona, Harrow, Jennifer, Herrero, Javier, Hubbard, Tim J P, Kinsella, Rhoda, Muffato, Matthieu, Parker, Anne, Spudich, Giulietta, Yates, Andy, Zerbino, Daniel R, Searle, Stephen M J
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Ensembl 2013
Flicek, Paul, Ahmed, Ikhlak, Amode, M Ridwan, Barrell, Daniel, Beal, Kathryn, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fairley, Susan, Fitzgerald, Stephen, Gil, Laurent, García-Girón, Carlos, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah, Juettemann, Thomas, Kähäri, Andreas K, Keenan, Stephen, Komorowska, Monika, Kulesha, Eugene, Longden, Ian, Maurel, Thomas, McLaren, William M, Muffato, Matthieu, Nag, Rishi, Overduin, Bert, Pignatelli, Miguel, Pritchard, Bethan, Pritchard, Emily, Riat, Harpreet Singh, Ritchie, Graham R S, Ruffier, Magali, Schuster, Michael, Sheppard, Daniel, Sobral, Daniel, Taylor, Kieron, Thormann, Anja, Trevanion, Stephen, White, Simon, Wilder, Steven P, Aken, Bronwen L, Birney, Ewan, Cunningham, Fiona, Dunham, Ian, Harrow, Jennifer, Herrero, Javier, Hubbard, Tim J P, Johnson, Nathan, Kinsella, Rhoda, Parker, Anne, Spudich, Giulietta, Yates, Andy, Zadissa, Amonida, Searle, Stephen M J
Published in Nucleic acids research (01.01.2013)
Published in Nucleic acids research (01.01.2013)
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Journal Article
The Ensembl gene annotation system
Aken, Bronwen L, Ayling, Sarah, Barrell, Daniel, Clarke, Laura, Curwen, Valery, Fairley, Susan, Fernandez Banet, Julio, Billis, Konstantinos, García Girón, Carlos, Hourlier, Thibaut, Howe, Kevin, Kähäri, Andreas, Kokocinski, Felix, Martin, Fergal J, Murphy, Daniel N, Nag, Rishi, Ruffier, Magali, Schuster, Michael, Tang, Y Amy, Vogel, Jan-Hinnerk, White, Simon, Zadissa, Amonida, Flicek, Paul, Searle, Stephen M J
Published in Database : the journal of biological databases and curation (2016)
Published in Database : the journal of biological databases and curation (2016)
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Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation
Pujar, Shashikant, O'Leary, Nuala A, Farrell, Catherine M, Loveland, Jane E, Mudge, Jonathan M, Wallin, Craig, Girón, Carlos G, Diekhans, Mark, Barnes, If, Bennett, Ruth, Berry, Andrew E, Cox, Eric, Davidson, Claire, Goldfarb, Tamara, Gonzalez, Jose M, Hunt, Toby, Jackson, John, Joardar, Vinita, Kay, Mike P, Kodali, Vamsi K, Martin, Fergal J, McAndrews, Monica, McGarvey, Kelly M, Murphy, Michael, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Seal, Ruth L, Suner, Marie-Marthe, Webb, David, Zhu, Sophia, Aken, Bronwen L, Bruford, Elspeth A, Bult, Carol J, Frankish, Adam, Murphy, Terence, Pruitt, Kim D
Published in Nucleic acids research (04.01.2018)
Published in Nucleic acids research (04.01.2018)
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Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
Howald, Cédric, Tanzer, Andrea, Chrast, Jacqueline, Kokocinski, Felix, Derrien, Thomas, Walters, Nathalie, Gonzalez, Jose M, Frankish, Adam, Aken, Bronwen L, Hourlier, Thibaut, Vogel, Jan-Hinnerk, White, Simon, Searle, Stephen, Harrow, Jennifer, Hubbard, Tim J, Guigó, Roderic, Reymond, Alexandre
Published in Genome research (01.09.2012)
Published in Genome research (01.09.2012)
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Journal Article
Avianbase: a community resource for bird genomics
Eöry, Lél, Gilbert, M Thomas P, Li, Cai, Li, Bo, Archibald, Alan, Aken, Bronwen L, Zhang, Guojie, Jarvis, Erich, Flicek, Paul, Burt, David W
Published in Genome Biology (29.01.2015)
Published in Genome Biology (29.01.2015)
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Divergence in gene expression within and between two closely related flycatcher species
Uebbing, Severin, Künstner, Axel, Mäkinen, Hannu, Backström, Niclas, Bolivar, Paulina, Burri, Reto, Dutoit, Ludovic, Mugal, Carina F., Nater, Alexander, Aken, Bronwen, Flicek, Paul, Martin, Fergal J., Searle, Stephen M. J., Ellegren, Hans
Published in Molecular ecology (01.05.2016)
Published in Molecular ecology (01.05.2016)
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Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate
Jasinska, Anna J, Zelaya, Ivette, Service, Susan K, Peterson, Christine B, Cantor, Rita M, Choi, Oi-Wa, DeYoung, Joseph, Eskin, Eleazar, Fairbanks, Lynn A, Fears, Scott, Furterer, Allison E, Huang, Yu S, Ramensky, Vasily, Schmitt, Christopher A, Svardal, Hannes, Jorgensen, Matthew J, Kaplan, Jay R, Villar, Diego, Aken, Bronwen L, Flicek, Paul, Nag, Rishi, Wong, Emily S, Blangero, John, Dyer, Thomas D, Bogomolov, Marina, Benjamini, Yoav, Weinstock, George M, Dewar, Ken, Sabatti, Chiara, Wilson, Richard K, Jentsch, J David, Warren, Wesley, Coppola, Giovanni, Woods, Roger P, Freimer, Nelson B
Published in Nature genetics (01.12.2017)
Published in Nature genetics (01.12.2017)
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GENCODE: the reference human genome annotation for The ENCODE Project
Harrow, Jennifer, Frankish, Adam, Gonzalez, Jose M, Tapanari, Electra, Diekhans, Mark, Kokocinski, Felix, Aken, Bronwen L, Barrell, Daniel, Zadissa, Amonida, Searle, Stephen, Barnes, If, Bignell, Alexandra, Boychenko, Veronika, Hunt, Toby, Kay, Mike, Mukherjee, Gaurab, Rajan, Jeena, Despacio-Reyes, Gloria, Saunders, Gary, Steward, Charles, Harte, Rachel, Lin, Michael, Howald, Cédric, Tanzer, Andrea, Derrien, Thomas, Chrast, Jacqueline, Walters, Nathalie, Balasubramanian, Suganthi, Pei, Baikang, Tress, Michael, Rodriguez, Jose Manuel, Ezkurdia, Iakes, van Baren, Jeltje, Brent, Michael, Haussler, David, Kellis, Manolis, Valencia, Alfonso, Reymond, Alexandre, Gerstein, Mark, Guigó, Roderic, Hubbard, Tim J
Published in Genome research (01.09.2012)
Published in Genome research (01.09.2012)
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A comprehensive genomic history of extinct and living elephants
Palkopoulou, Eleftheria, Lipson, Mark, Mallick, Swapan, Nielsen, Svend, Rohland, Nadin, Baleka, Sina, Karpinski, Emil, Ivancevic, Atma M., To, Thu-Hien, Kortschak, R. Daniel, Raison, Joy M., Qu, Zhipeng, Chin, Tat-Jun, Alt, Kurt W., Claesson, Stefan, Dalén, Love, MacPhee, Ross D. E., Meller, Harald, Roca, Alfred L., Ryder, Oliver A., Heiman, David, Young, Sarah, Breen, Matthew, Williams, Christina, Aken, Bronwen L., Ruffier, Magali, Karlsson, Elinor, Johnson, Jeremy, Di Palma, Federica, Alfoldi, Jessica, Adelson, David L., Mailund, Thomas, Munch, Kasper, Lindblad-Toh, Kerstin, Hofreiter, Michael, Poinar, Hendrik, Reich, David
Published in Proceedings of the National Academy of Sciences - PNAS (13.03.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (13.03.2018)
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The sheep genome illuminates biology of the rumen and lipid metabolism
Jiang, Yu, Xie, Min, Chen, Wenbin, Talbot, Richard, Maddox, Jillian F., Faraut, Thomas, Wu, Chunhua, Muzny, Donna M., Li, Yuxiang, Zhang, Wenguang, Stanton, Jo-Ann, Brauning, Rudiger, Barris, Wesley C., Hourlier, Thibaut, Aken, Bronwen L., Searle, Stephen M. J., Adelson, David L., Bian, Chao, Cam, Graham R., Chen, Yulin, Cheng, Shifeng, DeSilva, Udaya, Dixen, Karen, Dong, Yang, Fan, Guangyi, Franklin, Ian R., Fu, Shaoyin, Fuentes-Utrilla, Pablo, Guan, Rui, Highland, Margaret A., Holder, Michael E., Huang, Guodong, Ingham, Aaron B., Jhangiani, Shalini N., Kalra, Divya, Kovar, Christie L., Lee, Sandra L., Liu, Weiqing, Liu, Xin, Lu, Changxin, Lv, Tian, Mathew, Tittu, McWilliam, Sean, Menzies, Moira, Pan, Shengkai, Robelin, David, Servin, Bertrand, Townley, David, Wang, Wenliang, Wei, Bin, White, Stephen N., Yang, Xinhua, Ye, Chen, Yue, Yaojing, Zeng, Peng, Zhou, Qing, Hansen, Jacob B., Kristiansen, Karsten, Gibbs, Richard A., Flicek, Paul, Warkup, Christopher C., Jones, Huw E., Oddy, V. Hutton, Nicholas, Frank W., McEwan, John C., Kijas, James W., Wang, Jun, Worley, Kim C., Archibald, Alan L., Cockett, Noelle, Xu, Xun, Wang, Wen, Dalrymple, Brian P.
Published in Science (American Association for the Advancement of Science) (06.06.2014)
Published in Science (American Association for the Advancement of Science) (06.06.2014)
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Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication
Montague, Michael J., Li, Gang, Gandolfi, Barbara, Khan, Razib, Aken, Bronwen L., Searle, Steven M. J., Minx, Patrick, Hillier, LaDeana W., Koboldt, Daniel C., Davis, Brian W., Driscoll, Carlos A., Barr, Christina S., Blackistone, Kevin, Quilez, Javier, Lorente-Galdos, Belen, Marques-Bonet, Tomas, Alkan, Can, Thomas, Gregg W. C., Hahn, Matthew W., Menotti-Raymond, Marilyn, O'Brien, Stephen J., Wilson, Richard K., Lyons, Leslie A., Murphy, William J., Warren, Wesley C.
Published in Proceedings of the National Academy of Sciences - PNAS (02.12.2014)
Published in Proceedings of the National Academy of Sciences - PNAS (02.12.2014)
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Ensembl 2019
Cunningham, Fiona, Achuthan, Premanand, Akanni, Wasiu, Allen, James, Amode, M Ridwan, Armean, Irina M, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Cummins, Carla, Davidson, Claire, Dodiya, Kamalkumar Jayantilal, Gall, Astrid, Girón, Carlos García, Gil, Laurent, Grego, Tiago, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, Kay, Mike, Laird, Matthew R, Lavidas, Ilias, Liu, Zhicheng, Loveland, Jane E, Marugán, José C, Maurel, Thomas, McMahon, Aoife C, Moore, Benjamin, Morales, Joannella, Mudge, Jonathan M, Nuhn, Michael, Ogeh, Denye, Parker, Anne, Parton, Andrew, Patricio, Mateus, Abdul Salam, Ahamed Imran, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Sparrow, Helen, Stapleton, Eloise, Szuba, Marek, Taylor, Kieron, Threadgold, Glen, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Winterbottom, Andrea, Zadissa, Amonida, Chakiachvili, Marc, Frankish, Adam, Hunt, Sarah E, Kostadima, Myrto, Langridge, Nick, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M, Trevanion, Stephen J, Aken, Bronwen L, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
Wang, Zhuo, Pascual-Anaya, Juan, Zadissa, Amonida, Li, Wenqi, Niimura, Yoshihito, Huang, Zhiyong, Li, Chunyi, White, Simon, Xiong, Zhiqiang, Fang, Dongming, Wang, Bo, Ming, Yao, Chen, Yan, Zheng, Yuan, Kuraku, Shigehiro, Pignatelli, Miguel, Herrero, Javier, Beal, Kathryn, Nozawa, Masafumi, Li, Qiye, Wang, Juan, Zhang, Hongyan, Yu, Lili, Shigenobu, Shuji, Wang, Junyi, Liu, Jiannan, Flicek, Paul, Searle, Steve, Wang, Jun, Kuratani, Shigeru, Yin, Ye, Aken, Bronwen, Zhang, Guojie, Irie, Naoki
Published in Nature genetics (01.06.2013)
Published in Nature genetics (01.06.2013)
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Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
Carneiro, Miguel, Rubin, Carl-Johan, Di Palma, Federica, Albert, Frank W., Alföldi, Jessica, Barrio, Alvaro Martinez, Pielberg, Gerli, Rafati, Nima, Sayyab, Shumaila, Turner-Maier, Jason, Younis, Shady, Afonso, Sandra, Aken, Bronwen, Alves, Joel M., Barrell, Daniel, Bolet, Gerard, Boucher, Samuel, Burbano, Hernán A., Campos, Rita, Chang, Jean L., Duranthon, Veronique, Fontanesi, Luca, Garreau, Hervé, Heiman, David, Johnson, Jeremy, Mage, Rose G., Peng, Ze, Queney, Guillaume, Rogel-Gaillard, Claire, Ruffier, Magali, Searle, Steve, Villafuerte, Rafael, Xiong, Anqi, Young, Sarah, Forsberg-Nilsson, Karin, Good, Jeffrey M., Lander, Eric S., Ferrand, Nuno, Lindblad-Toh, Kerstin, Andersson, Leif
Published in Science (American Association for the Advancement of Science) (29.08.2014)
Published in Science (American Association for the Advancement of Science) (29.08.2014)
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The cavefish genome reveals candidate genes for eye loss
McGaugh, Suzanne E., Gross, Joshua B., Aken, Bronwen, Blin, Maryline, Borowsky, Richard, Chalopin, Domitille, Hinaux, Hélène, Jeffery, William R., Keene, Alex, Ma, Li, Minx, Patrick, Murphy, Daniel, O’Quin, Kelly E., Rétaux, Sylvie, Rohner, Nicolas, Searle, Steve M. J., Stahl, Bethany A., Tabin, Cliff, Volff, Jean-Nicolas, Yoshizawa, Masato, Warren, Wesley C.
Published in Nature communications (20.10.2014)
Published in Nature communications (20.10.2014)
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