H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions
Cai, Yichao, Zhang, Ying, Loh, Yan Ping, Tng, Jia Qi, Lim, Mei Chee, Cao, Zhendong, Raju, Anandhkumar, Lieberman Aiden, Erez, Li, Shang, Manikandan, Lakshmanan, Tergaonkar, Vinay, Tucker-Kellogg, Greg, Fullwood, Melissa Jane
Published in Nature communications (29.01.2021)
Published in Nature communications (29.01.2021)
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Journal Article
Chromatin Is Frequently Unknotted at the Megabase Scale
Goundaroulis, Dimos, Lieberman Aiden, Erez, Stasiak, Andrzej
Published in Biophysical journal (05.05.2020)
Published in Biophysical journal (05.05.2020)
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The genome sequence of segmental allotetraploid peanut Arachis hypogaea
Bertioli, David J., Jenkins, Jerry, Clevenger, Josh, Dudchenko, Olga, Gao, Dongying, Seijo, Guillermo, Leal-Bertioli, Soraya C. M., Ren, Longhui, Farmer, Andrew D., Pandey, Manish K., Samoluk, Sergio S., Abernathy, Brian, Agarwal, Gaurav, Ballén-Taborda, Carolina, Cameron, Connor, Campbell, Jacqueline, Chavarro, Carolina, Chitikineni, Annapurna, Chu, Ye, Dash, Sudhansu, El Baidouri, Moaine, Guo, Baozhu, Huang, Wei, Kim, Kyung Do, Korani, Walid, Lanciano, Sophie, Lui, Christopher G., Mirouze, Marie, Moretzsohn, Márcio C., Pham, Melanie, Shin, Jin Hee, Shirasawa, Kenta, Sinharoy, Senjuti, Sreedasyam, Avinash, Weeks, Nathan T., Zhang, Xinyou, Zheng, Zheng, Sun, Ziqi, Froenicke, Lutz, Aiden, Erez L., Michelmore, Richard, Varshney, Rajeev K., Holbrook, C. Corley, Cannon, Ethalinda K. S., Scheffler, Brian E., Grimwood, Jane, Ozias-Akins, Peggy, Cannon, Steven B., Jackson, Scott A., Schmutz, Jeremy
Published in Nature genetics (01.05.2019)
Published in Nature genetics (01.05.2019)
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Journal Article
De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture
Di Pierro, Michele, Cheng, Ryan R., Aiden, Erez Lieberman, Wolynes, Peter G., Onuchic, José N.
Published in Proceedings of the National Academy of Sciences - PNAS (14.11.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (14.11.2017)
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Journal Article
CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions
Kaushal, Anjali, Mohana, Giriram, Dorier, Julien, Özdemir, Isa, Omer, Arina, Cousin, Pascal, Semenova, Anastasiia, Taschner, Michael, Dergai, Oleksandr, Marzetta, Flavia, Iseli, Christian, Eliaz, Yossi, Weisz, David, Shamim, Muhammad Saad, Guex, Nicolas, Lieberman Aiden, Erez, Gambetta, Maria Cristina
Published in Nature communications (12.02.2021)
Published in Nature communications (12.02.2021)
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Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator
Sanborn, Adrian L, Yeh, Benjamin T, Feigerle, Jordan T, Hao, Cynthia V, Townshend, Raphael Jl, Lieberman Aiden, Erez, Dror, Ron O, Kornberg, Roger D
Published in eLife (27.04.2021)
Published in eLife (27.04.2021)
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The fundamental role of chromatin loop extrusion in physiological V(D)J recombination
Zhang, Yu, Zhang, Xuefei, Ba, Zhaoqing, Liang, Zhuoyi, Dring, Edward W., Hu, Hongli, Lou, Jiangman, Kyritsis, Nia, Zurita, Jeffrey, Shamim, Muhammad S., Presser Aiden, Aviva, Lieberman Aiden, Erez, Alt, Frederick W.
Published in Nature (London) (26.09.2019)
Published in Nature (London) (26.09.2019)
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A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Rao, Suhas S.P., Huntley, Miriam H., Durand, Neva C., Stamenova, Elena K., Bochkov, Ivan D., Robinson, James T., Sanborn, Adrian L., Machol, Ido, Omer, Arina D., Lander, Eric S., Aiden, Erez Lieberman
Published in Cell (18.12.2014)
Published in Cell (18.12.2014)
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Journal Article
Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals
Rowley, M Jordan, Poulet, Axel, Nichols, Michael H, Bixler, Brianna J, Sanborn, Adrian L, Brouhard, Elizabeth A, Hermetz, Karen, Linsenbaum, Hannah, Csankovszki, Gyorgyi, Lieberman Aiden, Erez, Corces, Victor G
Published in Genome research (01.03.2020)
Published in Genome research (01.03.2020)
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Journal Article
MCPH1 inhibits Condensin II during interphase by regulating its SMC2-Kleisin interface
Houlard, Martin, Cutts, Erin E, Shamim, Muhammad S, Godwin, Jonathan, Weisz, David, Presser Aiden, Aviva, Lieberman Aiden, Erez, Schermelleh, Lothar, Vannini, Alessandro, Nasmyth, Kim
Published in eLife (01.12.2021)
Published in eLife (01.12.2021)
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Journal Article
ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL
Wutz, Gordana, Ladurner, Rene, St Hilaire, Brian Glenn, Stocsits, Roman R, Nagasaka, Kota, Pignard, Benoit, Sanborn, Adrian, Tang, Wen, Várnai, Csilla, Ivanov, Miroslav P, Schoenfelder, Stefan, van der Lelij, Petra, Huang, Xingfan, Dürnberger, Gerhard, Roitinger, Elisabeth, Mechtler, Karl, Davidson, Iain Finley, Fraser, Peter, Lieberman-Aiden, Erez, Peters, Jan-Michael
Published in eLife (17.02.2020)
Published in eLife (17.02.2020)
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Journal Article
Cohesin depleted cells rebuild functional nuclear compartments after endomitosis
Cremer, Marion, Brandstetter, Katharina, Maiser, Andreas, Rao, Suhas S. P., Schmid, Volker J., Guirao-Ortiz, Miguel, Mitra, Namita, Mamberti, Stefania, Klein, Kyle N., Gilbert, David M., Leonhardt, Heinrich, Cardoso, M. Cristina, Aiden, Erez Lieberman, Harz, Hartmann, Cremer, Thomas
Published in Nature communications (01.12.2020)
Published in Nature communications (01.12.2020)
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Journal Article
Exploring chromosomal structural heterogeneity across multiple cell lines
Cheng, Ryan R, Contessoto, Vinicius G, Lieberman Aiden, Erez, Wolynes, Peter G, Di Pierro, Michele, Onuchic, Jose N
Published in eLife (13.10.2020)
Published in eLife (13.10.2020)
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Journal Article
Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild
Humble, Emily, Dobrynin, Pavel, Senn, Helen, Chuven, Justin, Scott, Alan F., Mohr, David W., Dudchenko, Olga, Omer, Arina D., Colaric, Zane, Lieberman Aiden, Erez, Al Dhaheri, Shaikha Salem, Wildt, David, Oliaji, Shireen, Tamazian, Gaik, Pukazhenthi, Budhan, Ogden, Rob, Koepfli, Klaus‐Peter
Published in Molecular ecology resources (01.11.2020)
Published in Molecular ecology resources (01.11.2020)
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Journal Article
Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress–Gene Response
Lee, Dominic Paul, Tan, Wilson Lek Wen, Anene-Nzelu, Chukwuemeka George, Lee, Chang Jie Mick, Li, Peter Yiqing, Luu, Tuan Danh Anh, Chan, Cheryl Xueli, Tiang, Zenia, Ng, Shi Ling, Huang, Xingfan, Efthymios, Motakis, Autio, Matias I, Jiang, Jianming, Fullwood, Melissa Jane, Prabhakar, Shyam, Lieberman Aiden, Erez, Foo, Roger Sik-Yin
Published in Circulation (New York, N.Y.) (16.04.2019)
Published in Circulation (New York, N.Y.) (16.04.2019)
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Journal Article
Using deep learning and Google Street View to estimate the demographic makeup of neighborhoods across the United States
Gebru, Timnit, Krause, Jonathan, Wang, Yilun, Chen, Duyun, Deng, Jia, Aiden, Erez Lieberman, Fei-Fei, Li
Published in Proceedings of the National Academy of Sciences - PNAS (12.12.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (12.12.2017)
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Journal Article
The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution
Van Dam, Matthew H, Cabras, Analyn Anzano, Henderson, James B, Rominger, Andrew J, Pérez Estrada, Cynthia, Omer, Arina D, Dudchenko, Olga, Lieberman Aiden, Erez, Lam, Athena W
Published in PLoS genetics (01.08.2021)
Published in PLoS genetics (01.08.2021)
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Journal Article
Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly
Kaur, Parwinder, Lui, Christopher, Dudchenko, Olga, Nandety, Raja Sekhar, Hurgobin, Bhavna, Pham, Melanie, Lieberman Aiden, Erez, Wen, Jiangqi, Mysore, Kirankumar
Published in International journal of molecular sciences (21.04.2021)
Published in International journal of molecular sciences (21.04.2021)
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