Database resources of the National Center for Biotechnology Information
Agarwala, Richa, Barrett, Tanya, Beck, Jeff, Benson, Dennis A, Bollin, Colleen, Bolton, Evan, Bourexis, Devon, Brister, J Rodney, Bryant, Stephen H, Canese, Kathi, Cavanaugh, Mark, Charowhas, Chad, Clark, Karen, Dondoshansky, Ilya, Feolo, Michael, Fitzpatrick, Lawrence, Funk, Kathryn, Geer, Lewis Y, Gorelenkov, Viatcheslav, Graeff, Alan, Hlavina, Wratko, Holmes, Brad, Johnson, Mark, Kattman, Brandi, Khotomlianski, Viatcheslav, Kimchi, Avi, Kimelman, Michael, Kimura, Masato, Kitts, Paul, Klimke, William, Kotliarov, Alex, Krasnov, Sergey, Kuznetsov, Anatoliy, Landrum, Melissa J, Landsman, David, Lathrop, Stacy, Lee, Jennifer M, Leubsdorf, Carl, Lu, Zhiyong, Madden, Thomas L, Marchler-Bauer, Aron, Malheiro, Adriana, Meric, Peter, Karsch-Mizrachi, Ilene, Mnev, Anatoly, Murphy, Terence, Orris, Rebecca, Ostell, James, O'Sullivan, Christopher, Palanigobu, Vasuki, Panchenko, Anna R, Phan, Lon, Pierov, Borys, Pruitt, Kim D, Rodarmer, Kurt, Sayers, Eric W, Schneider, Valerie, Schoch, Conrad L, Schuler, Gregory D, Sherry, Stephen T, Siyan, Karanjit, Soboleva, Alexandra, Soussov, Vladimir, Starchenko, Grigory, Tatusova, Tatiana A, Thibaud-Nissen, Francoise, Todorov, Kamen, Trawick, Bart W, Vakatov, Denis, Ward, Minghong, Yaschenko, Eugene, Zasypkin, Aleksandr, Zbicz, Kerry
Published in Nucleic Acids Research (04.01.2018)
Published in Nucleic Acids Research (04.01.2018)
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Database resources of the National Center for Biotechnology Information
Sayers, Eric W, Agarwala, Richa, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Clark, Karen, Connor, Ryan, Fiorini, Nicolas, Funk, Kathryn, Hefferon, Timothy, Holmes, J Bradley, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, Marchler-Bauer, Aron, Phan, Lon, Schneider, Valerie A, Schoch, Conrad L, Pruitt, Kim D, Ostell, James
Published in Nucleic acids research (08.01.2019)
Published in Nucleic acids research (08.01.2019)
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Journal Article
Database indexing for production MegaBLAST searches
Morgulis, Aleksandr, Coulouris, George, Raytselis, Yan, Madden, Thomas L., Agarwala, Richa, Schäffer, Alejandro A.
Published in Bioinformatics (15.08.2008)
Published in Bioinformatics (15.08.2008)
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Journal Article
Domain enhanced lookup time accelerated BLAST
Boratyn, Grzegorz M, Schäffer, Alejandro A, Agarwala, Richa, Altschul, Stephen F, Lipman, David J, Madden, Thomas L
Published in Biology direct (17.04.2012)
Published in Biology direct (17.04.2012)
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Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST
Gertz, E Michael, Yu, Yi-Kuo, Agarwala, Richa, Schäffer, Alejandro A, Altschul, Stephen F
Published in BMC biology (07.12.2006)
Published in BMC biology (07.12.2006)
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Journal Article
Modernizing reference genome assemblies
Church, Deanna M, Schneider, Valerie A, Graves, Tina, Auger, Katherine, Cunningham, Fiona, Bouk, Nathan, Chen, Hsiu-Chuan, Agarwala, Richa, McLaren, William M, Ritchie, Graham R S, Albracht, Derek, Kremitzki, Milinn, Rock, Susan, Kotkiewicz, Holland, Kremitzki, Colin, Wollam, Aye, Trani, Lee, Fulton, Lucinda, Fulton, Robert, Matthews, Lucy, Whitehead, Siobhan, Chow, Will, Torrance, James, Dunn, Matthew, Harden, Glenn, Threadgold, Glen, Wood, Jonathan, Collins, Joanna, Heath, Paul, Griffiths, Guy, Pelan, Sarah, Grafham, Darren, Eichler, Evan E, Weinstock, George, Mardis, Elaine R, Wilson, Richard K, Howe, Kerstin, Flicek, Paul, Hubbard, Tim
Published in PLoS biology (01.07.2011)
Published in PLoS biology (01.07.2011)
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Journal Article
Single haplotype assembly of the human genome from a hydatidiform mole
Steinberg, Karyn Meltz, Schneider, Valerie A, Graves-Lindsay, Tina A, Fulton, Robert S, Agarwala, Richa, Huddleston, John, Shiryev, Sergey A, Morgulis, Aleksandr, Surti, Urvashi, Warren, Wesley C, Church, Deanna M, Eichler, Evan E, Wilson, Richard K
Published in Genome research (01.12.2014)
Published in Genome research (01.12.2014)
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National Center for Biotechnology Information's Protein Clusters Database
Klimke, William, Agarwala, Richa, Badretdin, Azat, Chetvernin, Slava, Ciufo, Stacy, Fedorov, Boris, Kiryutin, Boris, O'Neill, Kathleen, Resch, Wolfgang, Resenchuk, Sergei, Schafer, Susan, Tolstoy, Igor, Tatusova, Tatiana
Published in Nucleic acids research (01.01.2009)
Published in Nucleic acids research (01.01.2009)
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Journal Article
Finding Candida auris in public metagenomic repositories
Mario-Vasquez, Jorge E, Bagal, Ujwal R, Lowe, Elijah, Morgulis, Aleksandr, Phan, John, Sexton, D Joseph, Shiryev, Sergey, Slatkevičius, Rytis, Welsh, Rory, Litvintseva, Anastasia P, Blumberg, Matthew, Agarwala, Richa, Chow, Nancy A
Published in PloS one (19.01.2024)
Published in PloS one (19.01.2024)
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Journal Article
A fast and symmetric DUST implementation to mask low-complexity DNA sequences
Morgulis, Aleksandr, Gertz, E Michael, Schäffer, Alejandro A, Agarwala, Richa
Published in Journal of computational biology (01.06.2006)
Published in Journal of computational biology (01.06.2006)
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Journal Article
Initial sequence and comparative analysis of the cat genome
Pontius, Joan U, Mullikin, James C, Smith, Douglas R, Lindblad-Toh, Kerstin, Gnerre, Sante, Clamp, Michele, Chang, Jean, Stephens, Robert, Neelam, Beena, Volfovsky, Natalia, Schäffer, Alejandro A, Agarwala, Richa, Narfström, Kristina, Murphy, William J, Giger, Urs, Roca, Alfred L, Antunes, Agostinho, Menotti-Raymond, Marilyn, Yuhki, Naoya, Pecon-Slattery, Jill, Johnson, Warren E, Bourque, Guillaume, Tesler, Glenn, O'Brien, Stephen J
Published in Genome Research (01.11.2007)
Published in Genome Research (01.11.2007)
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Journal Article
WindowMasker: window-based masker for sequenced genomes
Morgulis, Aleksandr, Gertz, E. Michael, Schäffer, Alejandro A., Agarwala, Richa
Published in Bioinformatics (15.01.2006)
Published in Bioinformatics (15.01.2006)
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Journal Article
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
Timme, Ruth E, Rand, Hugh, Shumway, Martin, Trees, Eija K, Simmons, Mustafa, Agarwala, Richa, Davis, Steven, Tillman, Glenn E, Defibaugh-Chavez, Stephanie, Carleton, Heather A, Klimke, William A, Katz, Lee S
Published in PeerJ (San Francisco, CA) (06.10.2017)
Published in PeerJ (San Francisco, CA) (06.10.2017)
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Journal Article
Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015)
Federhen, Scott, Rossello-Mora, Ramon, Klenk, Hans-Peter, Tindall, Brian J., Konstantinidis, Konstantinos T., Whitman, William B., Brown, Daniel, Labeda, David, Ussery, David, Garrity, George M., Colwell, Rita R., Hasan, Nur, Graf, Joerg, Parte, Aidan, Yarza, Pablo, Goldberg, Brittany, Sichtig, Heike, Karsch-Mizrachi, Ilene, Clark, Karen, McVeigh, Richard, Pruitt, Kim D., Tatusova, Tatiana, Falk, Robert, Turner, Seán, Madden, Thomas, Kitts, Paul, Kimchi, Avi, Klimke, William, Agarwala, Richa, DiCuccio, Michael, Ostell, James
Published in Environmental microbiome (09.02.2016)
Published in Environmental microbiome (09.02.2016)
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Journal Article
A Novel Nemaline Myopathy in the Amish Caused by a Mutation in Troponin T1
Johnston, Jennifer J., Kelley, Richard I., Crawford, Thomas O., Morton, D. Holmes, Agarwala, Richa, Koch, Thorsten, Schäffer, Alejandro A., Francomano, Clair A., Biesecker, Leslie G.
Published in American journal of human genetics (01.10.2000)
Published in American journal of human genetics (01.10.2000)
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Journal Article
Genome Sequence of the Banana Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens PS006
Gamez, Rocío M, Rodríguez, Fernando, Ramírez, Sandra, Gómez, Yolanda, Agarwala, Richa, Landsman, David, Mariño-Ramírez, Leonardo
Published in Genome announcements (Washington, DC) (05.05.2016)
Published in Genome announcements (Washington, DC) (05.05.2016)
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