New tools for the analysis and validation of cryo‐EM maps and atomic models
Afonine, Pavel V., Klaholz, Bruno P., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D., Urzhumtsev, Alexandre
Published in Acta crystallographica. Section D, Biological crystallography. (01.09.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.09.2018)
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Journal Article
Real‐space refinement in PHENIX for cryo‐EM and crystallography
Afonine, Pavel V., Poon, Billy K., Read, Randy J., Sobolev, Oleg V., Terwilliger, Thomas C., Urzhumtsev, Alexandre, Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.06.2018)
Published in Acta crystallographica. Section D, Biological crystallography. (01.06.2018)
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Journal Article
Polder maps: improving OMIT maps by excluding bulk solvent
Liebschner, Dorothee, Afonine, Pavel V., Moriarty, Nigel W., Poon, Billy K., Sobolev, Oleg V., Terwilliger, Thomas C., Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2017)
Published in Acta crystallographica. Section D, Biological crystallography. (01.02.2017)
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Journal Article
EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy
Barad, Benjamin A, Echols, Nathaniel, Wang, Ray Yu-Ruei, Cheng, Yifan, DiMaio, Frank, Adams, Paul D, Fraser, James S
Published in Nature methods (01.10.2015)
Published in Nature methods (01.10.2015)
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Journal Article
Improvement of cryo-EM maps by density modification
Terwilliger, Thomas C., Ludtke, Steven J., Read, Randy J., Adams, Paul D., Afonine, Pavel V.
Published in Nature methods (01.09.2020)
Published in Nature methods (01.09.2020)
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Journal Article
Towards automated crystallographic structure refinement with phenix.refine
Afonine, Pavel V., Grosse-Kunstleve, Ralf W., Echols, Nathaniel, Headd, Jeffrey J., Moriarty, Nigel W., Mustyakimov, Marat, Terwilliger, Thomas C., Urzhumtsev, Alexandre, Zwart, Peter H., Adams, Paul D.
Published in Acta crystallographica. Section D, Biological crystallography. (01.04.2012)
Published in Acta crystallographica. Section D, Biological crystallography. (01.04.2012)
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Journal Article
A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps
Terwilliger, Thomas C., Adams, Paul D., Afonine, Pavel V., Sobolev, Oleg V.
Published in Nature methods (01.11.2018)
Published in Nature methods (01.11.2018)
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Journal Article
MolProbity: More and better reference data for improved all‐atom structure validation
Williams, Christopher J., Headd, Jeffrey J., Moriarty, Nigel W., Prisant, Michael G., Videau, Lizbeth L., Deis, Lindsay N., Verma, Vishal, Keedy, Daniel A., Hintze, Bradley J., Chen, Vincent B., Jain, Swati, Lewis, Steven M., Arendall, W. Bryan, Snoeyink, Jack, Adams, Paul D., Lovell, Simon C., Richardson, Jane S., Richardson, David C.
Published in Protein science (01.01.2018)
Published in Protein science (01.01.2018)
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