Structural Alterations Driving Castration-Resistant Prostate Cancer Revealed by Linked-Read Genome Sequencing
Viswanathan, Srinivas R., Ha, Gavin, Hoff, Andreas M., Wala, Jeremiah A., Carrot-Zhang, Jian, Whelan, Christopher W., Haradhvala, Nicholas J., Freeman, Samuel S., Reed, Sarah C., Rhoades, Justin, Polak, Paz, Cipicchio, Michelle, Wankowicz, Stephanie A., Wong, Alicia, Kamath, Tushar, Zhang, Zhenwei, Gydush, Gregory J., Rotem, Denisse, Love, J. Christopher, Getz, Gad, Gabriel, Stacey, Zhang, Cheng-Zhong, Dehm, Scott M., Nelson, Peter S., Van Allen, Eliezer M., Choudhury, Atish D., Adalsteinsson, Viktor A., Beroukhim, Rameen, Taplin, Mary-Ellen, Meyerson, Matthew
Published in Cell (12.07.2018)
Published in Cell (12.07.2018)
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Journal Article
EGFR variant heterogeneity in glioblastoma resolved through single-nucleus sequencing
Francis, Joshua M, Zhang, Cheng-Zhong, Maire, Cecile L, Jung, Joonil, Manzo, Veronica E, Adalsteinsson, Viktor A, Homer, Heather, Haidar, Sam, Blumenstiel, Brendan, Pedamallu, Chandra Sekhar, Ligon, Azra H, Love, J Christopher, Meyerson, Matthew, Ligon, Keith L
Published in Cancer discovery (01.08.2014)
Published in Cancer discovery (01.08.2014)
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Journal Article
A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA
Doebley, Anna-Lisa, Ko, Minjeong, Liao, Hanna, Cruikshank, A. Eden, Santos, Katheryn, Kikawa, Caroline, Hiatt, Joseph B., Patton, Robert D., De Sarkar, Navonil, Collier, Katharine A., Hoge, Anna C. H., Chen, Katharine, Zimmer, Anat, Weber, Zachary T., Adil, Mohamed, Reichel, Jonathan B., Polak, Paz, Adalsteinsson, Viktor A., Nelson, Peter S., MacPherson, David, Parsons, Heather A., Stover, Daniel G., Ha, Gavin
Published in Nature communications (03.12.2022)
Published in Nature communications (03.12.2022)
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Journal Article
Single duplex DNA sequencing with CODEC detects mutations with high sensitivity
Bae, Jin H., Liu, Ruolin, Roberts, Eugenia, Nguyen, Erica, Tabrizi, Shervin, Rhoades, Justin, Blewett, Timothy, Xiong, Kan, Gydush, Gregory, Shea, Douglas, An, Zhenyi, Patel, Sahil, Cheng, Ju, Sridhar, Sainetra, Liu, Mei Hong, Lassen, Emilie, Skytte, Anne-Bine, Grońska-Pęski, Marta, Shoag, Jonathan E., Evrony, Gilad D., Parsons, Heather A., Mayer, Erica L., Makrigiorgos, G. Mike, Golub, Todd R., Adalsteinsson, Viktor A.
Published in Nature genetics (01.05.2023)
Published in Nature genetics (01.05.2023)
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Journal Article
Duplex-Repair enables highly accurate sequencing, despite DNA damage
Xiong, Kan, Shea, Douglas, Rhoades, Justin, Blewett, Timothy, Liu, Ruolin, Bae, Jin H, Nguyen, Erica, Makrigiorgos, G Mike, Golub, Todd R, Adalsteinsson, Viktor A
Published in Nucleic acids research (11.01.2022)
Published in Nucleic acids research (11.01.2022)
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Journal Article
Genomic and transcriptomic correlates of immunotherapy response within the tumor microenvironment of leptomeningeal metastases
Prakadan, Sanjay M., Alvarez-Breckenridge, Christopher A., Markson, Samuel C., Kim, Albert E., Klein, Robert H., Nayyar, Naema, Navia, Andrew W., Kuter, Benjamin M., Kolb, Kellie E., Bihun, Ivanna, Mora, Joana L., Bertalan, Mia Solana, Shaw, Brian, White, Michael, Kaplan, Alexander, Stocking, Jackson H., Wadsworth, Marc H., Lee, Eudocia Q., Chukwueke, Ugonma, Wang, Nancy, Subramanian, Megha, Rotem, Denisse, Cahill, Daniel P., Adalsteinsson, Viktor A., Miller, Jeffrey W., Sullivan, Ryan J., Carter, Scott L., Brastianos, Priscilla K., Shalek, Alex K.
Published in Nature communications (12.10.2021)
Published in Nature communications (12.10.2021)
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Journal Article
FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA
Liu, Yaping, Reed, Sarah C., Lo, Christopher, Choudhury, Atish D., Parsons, Heather A., Stover, Daniel G., Ha, Gavin, Gydush, Gregory, Rhoades, Justin, Rotem, Denisse, Freeman, Samuel, Katz, David W., Bandaru, Ravi, Zheng, Haizi, Fu, Hailu, Adalsteinsson, Viktor A., Kellis, Manolis
Published in Nature communications (30.03.2024)
Published in Nature communications (30.03.2024)
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Journal Article
Calibrating genomic and allelic coverage bias in single-cell sequencing
Zhang, Cheng-Zhong, Adalsteinsson, Viktor A., Francis, Joshua, Cornils, Hauke, Jung, Joonil, Maire, Cecile, Ligon, Keith L., Meyerson, Matthew, Love, J. Christopher
Published in Nature communications (16.04.2015)
Published in Nature communications (16.04.2015)
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Journal Article
The Mutational Landscape of Circulating Tumor Cells in Multiple Myeloma
Mishima, Yuji, Paiva, Bruno, Shi, Jiantao, Park, Jihye, Manier, Salomon, Takagi, Satoshi, Massoud, Mira, Perilla-Glen, Adriana, Aljawai, Yosra, Huynh, Daisy, Roccaro, Aldo M., Sacco, Antonio, Capelletti, Marzia, Detappe, Alexandre, Alignani, Diego, Anderson, Kenneth C., Munshi, Nikhil C., Prosper, Felipe, Lohr, Jens G., Ha, Gavin, Freeman, Samuel S., Van Allen, Eliezer M., Adalsteinsson, Viktor A., Michor, Franziska, San Miguel, Jesus F., Ghobrial, Irene M.
Published in Cell reports (Cambridge) (04.04.2017)
Published in Cell reports (Cambridge) (04.04.2017)
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Journal Article
Author Correction: A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA
Doebley, Anna-Lisa, Ko, Minjeong, Liao, Hanna, Cruikshank, A. Eden, Santos, Katheryn, Kikawa, Caroline, Hiatt, Joseph B., Patton, Robert D., De Sarkar, Navonil, Collier, Katharine A., Hoge, Anna C. H., Chen, Katharine, Zimmer, Anat, Weber, Zachary T., Adil, Mohamed, Reichel, Jonathan B., Polak, Paz, Adalsteinsson, Viktor A., Nelson, Peter S., MacPherson, David, Parsons, Heather A., Stover, Daniel G., Ha, Gavin
Published in Nature communications (25.01.2023)
Published in Nature communications (25.01.2023)
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Journal Article
Tumor fraction in cell-free DNA as a biomarker in prostate cancer
Choudhury, Atish D, Werner, Lillian, Francini, Edoardo, Wei, Xiao X, Ha, Gavin, Freeman, Samuel S, Rhoades, Justin, Reed, Sarah C, Gydush, Gregory, Rotem, Denisse, Lo, Christopher, Taplin, Mary-Ellen, Harshman, Lauren C, Zhang, Zhenwei, O'Connor, Edward P, Stover, Daniel G, Parsons, Heather A, Getz, Gad, Meyerson, Matthew, Love, J Christopher, Hahn, William C, Adalsteinsson, Viktor A
Published in JCI insight (02.11.2018)
Published in JCI insight (02.11.2018)
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Journal Article
Author Correction: Genomic and transcriptomic correlates of immunotherapy response within the tumor microenvironment of leptomeningeal metastases
Prakadan, Sanjay M., Alvarez-Breckenridge, Christopher A., Markson, Samuel C., Kim, Albert E., Klein, Robert H., Nayyar, Naema, Navia, Andrew W., Kuter, Benjamin M., Kolb, Kellie E., Bihun, Ivanna, Mora, Joana L., Bertalan, Mia Solana, Shaw, Brian, White, Michael, Kaplan, Alexander, Stocking, Jackson H., Wadsworth, Marc H., Lee, Eudocia Q., Chukwueke, Ugonma, Wang, Nancy, Subramanian, Megha, Rotem, Denisse, Cahill, Daniel P., Adalsteinsson, Viktor A., Miller, Jeffrey W., Sullivan, Ryan J., Carter, Scott L., Brastianos, Priscilla K., Shalek, Alex K.
Published in Nature communications (25.11.2021)
Published in Nature communications (25.11.2021)
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Journal Article
Technological considerations for genome-guided diagnosis and management of cancer
Lennon, Niall J, Adalsteinsson, Viktor A, Gabriel, Stacey B
Published in Genome medicine (26.10.2016)
Published in Genome medicine (26.10.2016)
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Journal Article
Modeling clonal structure over narrow time frames via circulating tumor DNA in metastatic breast cancer
Weber, Zachary T, Collier, Katharine A, Tallman, David, Forman, Juliet, Shukla, Sachet, Asad, Sarah, Rhoades, Justin, Freeman, Samuel, Parsons, Heather A, Williams, Nicole O, Barroso-Sousa, Romualdo, Stover, Elizabeth H, Mahdi, Haider, Cibulskis, Carrie, Lennon, Niall J, Ha, Gavin, Adalsteinsson, Viktor A, Tolaney, Sara M, Stover, Daniel G
Published in Genome medicine (20.05.2021)
Published in Genome medicine (20.05.2021)
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Journal Article
Tumor cells are dislodged into the pulmonary vein during lobectomy
Yao, Xiaosai, PhD, Williamson, Christina, MD, Adalsteinsson, Viktor A., BS, D'Agostino, Richard S., MD, Fitton, Torin, MD, Smaroff, Gregory G., MD, William, Robert T., BS, Wittrup, K. Dane, PhD, Love, J. Christopher, PhD
Published in The Journal of thoracic and cardiovascular surgery (01.12.2014)
Published in The Journal of thoracic and cardiovascular surgery (01.12.2014)
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Journal Article
Circulating Cell-Free DNA as Biomarker of Taxane Resistance in Metastatic Castration-Resistant Prostate Cancer
Francini, Edoardo, Ou, Fang-Shu, Rhoades, Justin, Wolfe, Eric G., O’Connor, Edward P., Ha, Gavin, Gydush, Gregory, Kelleher, Kaitlin M., Bhatt, Rupal S., Balk, Steven P., Sweeney, Christopher J., Adalsteinsson, Viktor A., Taplin, Mary-Ellen, Choudhury, Atish D.
Published in Cancers (12.08.2021)
Published in Cancers (12.08.2021)
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Journal Article
Comparison of whole‐genome and immunoglobulin‐based circulating tumor DNA assays in diffuse large B‐cell lymphoma
Merryman, Reid W., Rhoades, Justin, Xiong, Kan, Redd, Robert A., Antel, Katherine, An, Hyun Hwan, McDonough, Mikaela, Guerrero, Liliana, Crnjac, Andela, Sridhar, Sainetra, Blewett, Timothy, Cheng, Ju, Dahi, Parastoo B., Nieto, Yago, Joyce, Robin M., Chen, Yi‐Bin, Herrera, Alex F., Armand, Philippe, Murakami, Mark, Adalsteinsson, Viktor A.
Published in HemaSphere (01.04.2024)
Published in HemaSphere (01.04.2024)
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Journal Article
Recent Developments in Mutation Enrichment and Detection Technologies
Darbeheshti, Farzaneh, Yu, Fangyan, Ahmed, Farzana, Adalsteinsson, Viktor A, Makrigiorgos, G Mike
Published in Clinical chemistry (Baltimore, Md.) (06.10.2022)
Published in Clinical chemistry (Baltimore, Md.) (06.10.2022)
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Journal Article
Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers
Parikh, Aparna R., Leshchiner, Ignaty, Elagina, Liudmila, Goyal, Lipika, Levovitz, Chaya, Siravegna, Giulia, Livitz, Dimitri, Rhrissorrakrai, Kahn, Martin, Elizabeth E., Van Seventer, Emily E., Hanna, Megan, Slowik, Kara, Utro, Filippo, Pinto, Christopher J., Wong, Alicia, Danysh, Brian P., de la Cruz, Ferran Fece, Fetter, Isobel J., Nadres, Brandon, Shahzade, Heather A., Allen, Jill N., Blaszkowsky, Lawrence S., Clark, Jeffrey W., Giantonio, Bruce, Murphy, Janet E., Nipp, Ryan D., Roeland, Eric, Ryan, David P., Weekes, Colin D., Kwak, Eunice L., Faris, Jason E., Wo, Jennifer Y., Aguet, François, Dey-Guha, Ipsita, Hazar-Rethinam, Mehlika, Dias-Santagata, Dora, Ting, David T., Zhu, Andrew X., Hong, Theodore S., Golub, Todd R., Iafrate, A. John, Adalsteinsson, Viktor A., Bardelli, Alberto, Parida, Laxmi, Juric, Dejan, Getz, Gad, Corcoran, Ryan B.
Published in Nature medicine (01.09.2019)
Published in Nature medicine (01.09.2019)
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Journal Article
Association of Cell-Free DNA Tumor Fraction and Somatic Copy Number Alterations With Survival in Metastatic Triple-Negative Breast Cancer
Stover, Daniel G, Parsons, Heather A, Ha, Gavin, Freeman, Samuel S, Barry, William T, Guo, Hao, Choudhury, Atish D, Gydush, Gregory, Reed, Sarah C, Rhoades, Justin, Rotem, Denisse, Hughes, Melissa E, Dillon, Deborah A, Partridge, Ann H, Wagle, Nikhil, Krop, Ian E, Getz, Gad, Golub, Todd R, Love, J Christopher, Winer, Eric P, Tolaney, Sara M, Lin, Nancy U, Adalsteinsson, Viktor A
Published in Journal of clinical oncology (20.02.2018)
Published in Journal of clinical oncology (20.02.2018)
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