Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis
Bae, Taejeong, Tomasini, Livia, Mariani, Jessica, Zhou, Bo, Roychowdhury, Tanmoy, Franjic, Daniel, Pletikos, Mihovil, Pattni, Reenal, Chen, Bo-Juen, Venturini, Elisa, Riley-Gillis, Bridget, Sestan, Nenad, Urban, Alexander E, Abyzov, Alexej, Vaccarino, Flora M
Published in Science (American Association for the Advancement of Science) (02.02.2018)
Published in Science (American Association for the Advancement of Science) (02.02.2018)
Get full text
Journal Article
Landmarks of human embryonic development inscribed in somatic mutations
Bizzotto, Sara, Dou, Yanmei, Ganz, Javier, Doan, Ryan N, Kwon, Minseok, Bohrson, Craig L, Kim, Sonia N, Bae, Taejeong, Abyzov, Alexej, Park, Peter J, Walsh, Christopher A
Published in Science (American Association for the Advancement of Science) (19.03.2021)
Published in Science (American Association for the Advancement of Science) (19.03.2021)
Get full text
Journal Article
MetaSV: an accurate and integrative structural-variant caller for next generation sequencing
Mohiyuddin, Marghoob, Mu, John C, Li, Jian, Bani Asadi, Narges, Gerstein, Mark B, Abyzov, Alexej, Wong, Wing H, Lam, Hugo Y K
Published in Bioinformatics (15.08.2015)
Published in Bioinformatics (15.08.2015)
Get full text
Journal Article
Somatic copy number mosaicism in human skin revealed by induced pluripotent stem cells
ABYZOV, Alexej, MARIANI, Jessica, KOCABAS, Arif, CALIXTO, Nathaniel E, GRIGORENKO, Elena L, HUTTNER, Anita, CHAWARSKA, Katarzyna, WEISSMAN, Sherman, ECKEHART URBAN, Alexander, GERSTEIN, Mark, VACCARINO, Flora M, PALEJEV, Dean, YING ZHANG, HANEY, Michael Seamus, TOMASINI, Livia, FERRANDINO, Anthony F, BELMAKER, Lior A. Rosenberg, SZEKELY, Anna, WILSON, Michael
Published in Nature (London) (20.12.2012)
Published in Nature (London) (20.12.2012)
Get full text
Journal Article
Landscape and variation of novel retroduplications in 26 human populations
Zhang, Yan, Li, Shantao, Abyzov, Alexej, Gerstein, Mark B
Published in PLoS computational biology (01.06.2017)
Published in PLoS computational biology (01.06.2017)
Get full text
Journal Article
SCELLECTOR: ranking amplification bias in single cells using shallow sequencing
Sarangi, Vivekananda, Jourdon, Alexandre, Bae, Taejeong, Panda, Arijit, Vaccarino, Flora, Abyzov, Alexej
Published in BMC bioinformatics (12.11.2020)
Published in BMC bioinformatics (12.11.2020)
Get full text
Journal Article
A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals
Chen, Jieming, Rozowsky, Joel, Galeev, Timur R, Harmanci, Arif, Kitchen, Robert, Bedford, Jason, Abyzov, Alexej, Kong, Yong, Regan, Lynne, Gerstein, Mark
Published in Nature communications (18.04.2016)
Published in Nature communications (18.04.2016)
Get full text
Journal Article
Control-independent mosaic single nucleotide variant detection with DeepMosaic
Yang, Xiaoxu, Xu, Xin, Breuss, Martin W, Antaki, Danny, Ball, Laurel L, Chung, Changuk, Shen, Jiawei, Li, Chen, George, Renee D, Wang, Yifan, Bae, Taejeong, Cheng, Yuhe, Abyzov, Alexej, Wei, Liping, Alexandrov, Ludmil B, Sebat, Jonathan L, Gleeson, Joseph G
Published in Nature biotechnology (01.06.2023)
Published in Nature biotechnology (01.06.2023)
Get full text
Journal Article
Characterization of enhancer activity in early human neurodevelopment using Massively Parallel Reporter Assay (MPRA) and forebrain organoids
Capauto, Davide, Wang, Yifan, Wu, Feinan, Norton, Scott, Mariani, Jessica, Inoue, Fumitaka, Crawford, Gregory E, Ahituv, Nadav, Abyzov, Alexej, Vaccarino, Flora M
Published in Scientific reports (16.02.2024)
Published in Scientific reports (16.02.2024)
Get full text
Journal Article
Molecular signatures of multiple myeloma progression through single cell RNA-Seq
Jang, Jin Sung, Li, Ying, Mitra, Amit Kumar, Bi, Lintao, Abyzov, Alexej, van Wijnen, Andre J, Baughn, Linda B, Van Ness, Brian, Rajkumar, Vincent, Kumar, Shaji, Jen, Jin
Published in Blood cancer journal (New York) (03.01.2019)
Published in Blood cancer journal (New York) (03.01.2019)
Get full text
Journal Article
Patient-reported (EORTC QLQ-CIPN20) versus physician-reported (CTCAE) quantification of oxaliplatin- and paclitaxel/carboplatin-induced peripheral neuropathy in NCCTG/Alliance clinical trials
Le-Rademacher, Jennifer, Kanwar, Rahul, Seisler, Drew, Pachman, Deirdre R., Qin, Rui, Abyzov, Alexej, Ruddy, Kathryn J., Banck, Michaela S., Lavoie Smith, Ellen M., Dorsey, Susan G., Aaronson, Neil K., Sloan, Jeff, Loprinzi, Charles L., Beutler, Andreas S.
Published in Supportive care in cancer (01.11.2017)
Published in Supportive care in cancer (01.11.2017)
Get full text
Journal Article
Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division
Abyzov, Alexej, Iskow, Rebecca, Gokcumen, Omer, Radke, David W, Balasubramanian, Suganthi, Pei, Baikang, Habegger, Lukas, Lee, Charles, Gerstein, Mark
Published in Genome research (01.12.2013)
Published in Genome research (01.12.2013)
Get full text
Journal Article
Comprehensive identification of somatic nucleotide variants in human brain tissue
Wang, Yifan, Bae, Taejeong, Thorpe, Jeremy, Sherman, Maxwell A, Jones, Attila G, Cho, Sean, Daily, Kenneth, Dou, Yanmei, Ganz, Javier, Galor, Alon, Lobon, Irene, Pattni, Reenal, Rosenbluh, Chaggai, Tomasi, Simone, Tomasini, Livia, Yang, Xiaoxu, Zhou, Bo, Akbarian, Schahram, Ball, Laurel L, Bizzotto, Sara, Emery, Sarah B, Doan, Ryan, Fasching, Liana, Jang, Yeongjun, Juan, David, Lizano, Esther, Luquette, Lovelace J, Moldovan, John B, Narurkar, Rujuta, Oetjens, Matthew T, Rodin, Rachel E, Sekar, Shobana, Shin, Joo Heon, Soriano, Eduardo, Straub, Richard E, Zhou, Weichen, Chess, Andrew, Gleeson, Joseph G, Marquès-Bonet, Tomas, Park, Peter J, Peters, Mette A, Pevsner, Jonathan, Walsh, Christopher A, Weinberger, Daniel R, Vaccarino, Flora M, Moran, John V, Urban, Alexander E, Kidd, Jeffrey M, Mills, Ryan E, Abyzov, Alexej
Published in Genome Biology (29.03.2021)
Published in Genome Biology (29.03.2021)
Get full text
Journal Article
Combining copy number, methylation markers, and mutations as a panel for endometrial cancer detection via intravaginal tampon collection
Sangtani, Ajleeta, Wang, Chen, Weaver, Amy, Hoppman, Nicole L., Kerr, Sarah E., Abyzov, Alexej, Shridhar, Viji, Staub, Julie, Kocher, Jean-Pierre A., Voss, Jesse S., Podratz, Karl C., Wentzensen, Nicolas, Kisiel, John B., Sherman, Mark E., Bakkum-Gamez, Jamie N.
Published in Gynecologic oncology (01.02.2020)
Published in Gynecologic oncology (01.02.2020)
Get full text
Journal Article
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms
Abyzov, Alexej, Li, Shantao, Kim, Daniel Rhee, Mohiyuddin, Marghoob, Stütz, Adrian M, Parrish, Nicholas F, Mu, Xinmeng Jasmine, Clark, Wyatt, Chen, Ken, Hurles, Matthew, Korbel, Jan O, Lam, Hugo Y K, Lee, Charles, Gerstein, Mark B
Published in Nature communications (01.06.2015)
Published in Nature communications (01.06.2015)
Get full text
Journal Article