Pan-genome de Bruijn graph using the bidirectional FM-index
Depuydt, Lore, Renders, Luca, Abeel, Thomas, Fostier, Jan
Published in BMC bioinformatics (26.10.2023)
Published in BMC bioinformatics (26.10.2023)
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Journal Article
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement
Walker, Bruce J, Abeel, Thomas, Shea, Terrance, Priest, Margaret, Abouelliel, Amr, Sakthikumar, Sharadha, Cuomo, Christina A, Zeng, Qiandong, Wortman, Jennifer, Young, Sarah K, Earl, Ashlee M
Published in PloS one (19.11.2014)
Published in PloS one (19.11.2014)
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Journal Article
Metagenomic-based surveillance systems for antibiotic resistance in non-clinical settings
Pillay, Stephanie, Calderón-Franco, David, Urhan, Aysun, Abeel, Thomas
Published in Frontiers in microbiology (02.12.2022)
Published in Frontiers in microbiology (02.12.2022)
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Journal Article
StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities
van Dijk, Lucas R, Walker, Bruce J, Straub, Timothy J, Worby, Colin J, Grote, Alexandra, Schreiber, 4th, Henry L, Anyansi, Christine, Pickering, Amy J, Hultgren, Scott J, Manson, Abigail L, Abeel, Thomas, Earl, Ashlee M
Published in Genome Biology (07.03.2022)
Published in Genome Biology (07.03.2022)
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Journal Article
ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during Arabidopsis Leaf Development
Vercruyssen, Liesbeth, Verkest, Aurine, Gonzalez, Nathalie, Heyndrickx, Ken S., Eeckhout, Dominique, Han, Soon-Ki, Jégu, Teddy, Archacki, Rafal, Van Leene, Jelle, Andriankaja, Megan, De Bodt, Stefanie, Abeel, Thomas, Coppens, Frederik, Dhondt, Stijn, De Milde, Liesbeth, Vermeersch, Mattias, Maleux, Katrien, Gevaert, Kris, Jerzmanowski, Andrzej, Benhamed, Moussa, Wagner, Doris, Vandepoele, Klaas, De Jaeger, Geert, Inzé, Dirk
Published in The Plant cell (01.01.2014)
Published in The Plant cell (01.01.2014)
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Journal Article
Generic eukaryotic core promoter prediction using structural features of DNA
Abeel, Thomas, Saeys, Yvan, Bonnet, Eric, Rouzé, Pierre, Van de Peer, Yves
Published in Genome Research (01.02.2008)
Published in Genome Research (01.02.2008)
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Journal Article
Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization
Salazar, Alex N, Gorter de Vries, Arthur R, van den Broek, Marcel, Brouwers, Nick, de la Torre Cortès, Pilar, Kuijpers, Niels G A, Daran, Jean-Marc G, Abeel, Thomas
Published in BMC genomics (02.12.2019)
Published in BMC genomics (02.12.2019)
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Journal Article
An educational guide for nanopore sequencing in the classroom
Salazar, Alex N, Nobrega, Franklin L, Anyansi, Christine, Aparicio-Maldonado, Cristian, Costa, Ana Rita, Haagsma, Anna C, Hiralal, Anwar, Mahfouz, Ahmed, McKenzie, Rebecca E, van Rossum, Teunke, Brouns, Stan J J, Abeel, Thomas
Published in PLoS computational biology (01.01.2020)
Published in PLoS computational biology (01.01.2020)
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Journal Article
Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice
Donaldson, Gregory P., Chou, Wen-Chi, Manson, Abigail L., Rogov, Peter, Abeel, Thomas, Bochicchio, James, Ciulla, Dawn, Melnikov, Alexandre, Ernst, Peter B., Chu, Hiutung, Giannoukos, Georgia, Earl, Ashlee M., Mazmanian, Sarkis K.
Published in Nature microbiology (01.05.2020)
Published in Nature microbiology (01.05.2020)
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Journal Article
Integrated omics of Saccharomyces cerevisiae CENPK2-1C reveals pleiotropic drug resistance and lipidomic adaptations to cannabidiol
Jordan, Erin Noel, Shirali Hossein Zade, Ramin, Pillay, Stephanie, van Lent, Paul, Abeel, Thomas, Kayser, Oliver
Published in NPJ systems biology and applications (31.05.2024)
Published in NPJ systems biology and applications (31.05.2024)
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Journal Article
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles
Abeel, Thomas, Saeys, Yvan, Rouzé, Pierre, Van de Peer, Yves
Published in Bioinformatics (01.07.2008)
Published in Bioinformatics (01.07.2008)
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Journal Article
Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development
Holder, Jason W, Ulrich, Jil C, DeBono, Anthony C, Godfrey, Paul A, Desjardins, Christopher A, Zucker, Jeremy, Zeng, Qiandong, Leach, Alex L B, Ghiviriga, Ion, Dancel, Christine, Abeel, Thomas, Gevers, Dirk, Kodira, Chinnappa D, Desany, Brian, Affourtit, Jason P, Birren, Bruce W, Sinskey, Anthony J
Published in PLoS genetics (01.09.2011)
Published in PLoS genetics (01.09.2011)
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