The livestock reservoir for antimicrobial resistance: a personal view on changing patterns of risks, effects of interventions and the way forward
Aarestrup, Frank M.
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (05.06.2015)
Published in Philosophical transactions of the Royal Society of London. Series B. Biological sciences (05.06.2015)
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Journal Article
Solving the problem of comparing whole bacterial genomes across different sequencing platforms
Kaas, Rolf S, Leekitcharoenphon, Pimlapas, Aarestrup, Frank M, Lund, Ole
Published in PloS one (11.08.2014)
Published in PloS one (11.08.2014)
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Journal Article
ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
Florensa, Alfred Ferrer, Kaas, Rolf Sommer, Clausen, Philip Thomas Lanken Conradsen, Aytan-Aktug, Derya, Aarestrup, Frank M
Published in Microbial genomics (01.01.2022)
Published in Microbial genomics (01.01.2022)
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Journal Article
Real-time whole-genome sequencing for routine typing, surveillance, and outbreak detection of verotoxigenic Escherichia coli
Joensen, Katrine Grimstrup, Scheutz, Flemming, Lund, Ole, Hasman, Henrik, Kaas, Rolf S, Nielsen, Eva M, Aarestrup, Frank M
Published in Journal of clinical microbiology (01.05.2014)
Published in Journal of clinical microbiology (01.05.2014)
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Journal Article
Monitoring SARS-CoV-2 Circulation and Diversity through Community Wastewater Sequencing, the Netherlands and Belgium
Izquierdo-Lara, Ray, Elsinga, Goffe, Heijnen, Leo, Munnink, Bas B Oude, Schapendonk, Claudia M E, Nieuwenhuijse, David, Kon, Matthijs, Lu, Lu, Aarestrup, Frank M, Lycett, Samantha, Medema, Gertjan, Koopmans, Marion P G, de Graaf, Miranda
Published in Emerging infectious diseases (01.05.2021)
Published in Emerging infectious diseases (01.05.2021)
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Journal Article
Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
LARSEN, Mette V, COSENTINO, Salvatore, LUND, Ole, RASMUSSEN, Simon, FRIIS, Carsten, HASMAN, Henrik, LYKKE MARVIG, Rasmus, JELSBAK, Lars, SICHERITZ-PONTEN, Thomas, USSERY, David W, AARESTRUP, Frank M
Published in Journal of Clinical Microbiology (01.04.2012)
Published in Journal of Clinical Microbiology (01.04.2012)
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Journal Article
Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples
Hasman, Henrik, Saputra, Dhany, Sicheritz-Ponten, Thomas, Lund, Ole, Svendsen, Christina Aaby, Frimodt-Møller, Niels, Aarestrup, Frank M.
Published in Journal of Clinical Microbiology (01.01.2014)
Published in Journal of Clinical Microbiology (01.01.2014)
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Journal Article
Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica
Leekitcharoenphon, Pimlapas, Nielsen, Eva M, Kaas, Rolf S, Lund, Ole, Aarestrup, Frank M
Published in PloS one (04.02.2014)
Published in PloS one (04.02.2014)
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Journal Article
Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing
Hjelmsø, Mathis Hjort, Hellmér, Maria, Fernandez-Cassi, Xavier, Timoneda, Natàlia, Lukjancenko, Oksana, Seidel, Michael, Elsässer, Dennis, Aarestrup, Frank M, Löfström, Charlotta, Bofill-Mas, Sílvia, Abril, Josep F, Girones, Rosina, Schultz, Anna Charlotte
Published in PloS one (18.01.2017)
Published in PloS one (18.01.2017)
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Journal Article
Benchmarking of methods for genomic taxonomy
Larsen, Mette V, Cosentino, Salvatore, Lukjancenko, Oksana, Saputra, Dhany, Rasmussen, Simon, Hasman, Henrik, Sicheritz-Pontén, Thomas, Aarestrup, Frank M, Ussery, David W, Lund, Ole
Published in Journal of clinical microbiology (01.05.2014)
Published in Journal of clinical microbiology (01.05.2014)
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Journal Article
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand
Siriphap, Achiraya, Leekitcharoenphon, Pimlapas, Kaas, Rolf S, Theethakaew, Chonchanok, Aarestrup, Frank M, Sutheinkul, Orasa, Hendriksen, Rene S
Published in PloS one (19.01.2017)
Published in PloS one (19.01.2017)
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Journal Article
Using Genomics to Track Global Antimicrobial Resistance
Hendriksen, Rene S, Bortolaia, Valeria, Tate, Heather, Tyson, Gregory H, Aarestrup, Frank M, McDermott, Patrick F
Published in Frontiers in public health (04.09.2019)
Published in Frontiers in public health (04.09.2019)
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Journal Article
Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome
Ostenfeld, Line Jensen, Munk, Patrick, Aarestrup, Frank M, Otani, Saria
Published in PloS one (30.03.2023)
Published in PloS one (30.03.2023)
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Journal Article
Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
Kaas, Rolf S, Friis, Carsten, Ussery, David W, Aarestrup, Frank M
Published in BMC genomics (31.10.2012)
Published in BMC genomics (31.10.2012)
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Journal Article
Modelling the effectiveness of surveillance based on metagenomics in detecting, monitoring, and forecasting antimicrobial resistance in livestock production under economic constraints
Apenteng, Ofosuhene O., Aarestrup, Frank M., Vigre, Håkan
Published in Scientific reports (21.11.2023)
Published in Scientific reports (21.11.2023)
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