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Neonatal gut microbiota associates with childhood multisensitized atopy and T cell differentiation
Fujimura, Kei E, Sitarik, Alexandra R, Havstad, Suzanne, Lin, Din L, Levan, Sophia, Fadrosh, Douglas, Panzer, Ariane R, LaMere, Brandon, Rackaityte, Elze, Lukacs, Nicholas W, Wegienka, Ganesa, Boushey, Homer A, Ownby, Dennis R, Zoratti, Edward M, Levin, Albert M, Johnson, Christine C, Lynch, Susan V
Published in Nature medicine (01.10.2016)
Published in Nature medicine (01.10.2016)
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gutSMASH predicts specialized primary metabolic pathways from the human gut microbiota
Pascal Andreu, Victòria, Augustijn, Hannah E., Chen, Lianmin, Zhernakova, Alexandra, Fu, Jingyuan, Fischbach, Michael A., Dodd, Dylan, Medema, Marnix H.
Published in Nature biotechnology (01.10.2023)
Published in Nature biotechnology (01.10.2023)
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Genomic variation landscape of the human gut microbiome
Schloissnig, Siegfried, Arumugam, Manimozhiyan, Sunagawa, Shinichi, Mitreva, Makedonka, Tap, Julien, Zhu, Ana, Waller, Alison, Mende, Daniel R., Kultima, Jens Roat, Martin, John, Kota, Karthik, Sunyaev, Shamil R., Weinstock, George M., Bork, Peer
Published in Nature (London) (03.01.2013)
Published in Nature (London) (03.01.2013)
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Enterotypes of the human gut microbiome
Arumugam, Manimozhiyan, Raes, Jeroen, Pelletier, Eric, Le Paslier, Denis, Yamada, Takuji, Mende, Daniel R., Fernandes, Gabriel R., Tap, Julien, Bruls, Thomas, Batto, Jean-Michel, Bertalan, Marcelo, Borruel, Natalia, Casellas, Francesc, Fernandez, Leyden, Gautier, Laurent, Hansen, Torben, Hattori, Masahira, Hayashi, Tetsuya, Kleerebezem, Michiel, Kurokawa, Ken, Leclerc, Marion, Levenez, Florence, Manichanh, Chaysavanh, Nielsen, H. Bjørn, Nielsen, Trine, Pons, Nicolas, Poulain, Julie, Qin, Junjie, Sicheritz-Ponten, Thomas, Tims, Sebastian, Torrents, David, Ugarte, Edgardo, Zoetendal, Erwin G., Wang, Jun, Guarner, Francisco, Pedersen, Oluf, de Vos, Willem M., Brunak, Søren, Doré, Joel, Weissenbach, Jean, Ehrlich, S. Dusko, Bork, Peer
Published in Nature (London) (12.05.2011)
Published in Nature (London) (12.05.2011)
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An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia
Dillon, S M, Lee, E J, Kotter, C V, Austin, G L, Dong, Z, Hecht, D K, Gianella, S, Siewe, B, Smith, D M, Landay, A L, Robertson, C E, Frank, D N, Wilson, C C
Published in Mucosal immunology (01.07.2014)
Published in Mucosal immunology (01.07.2014)
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Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease
Wang, Zeneng, Klipfell, Elizabeth, Bennett, Brian J., Koeth, Robert, Levison, Bruce S., DuGar, Brandon, Feldstein, Ariel E., Britt, Earl B., Fu, Xiaoming, Chung, Yoon-Mi, Wu, Yuping, Schauer, Phil, Smith, Jonathan D., Allayee, Hooman, Tang, W. H. Wilson, DiDonato, Joseph A., Lusis, Aldons J., Hazen, Stanley L.
Published in Nature (London) (07.04.2011)
Published in Nature (London) (07.04.2011)
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Human gut microbiota community structures in urban and rural populations in Russia
Tyakht, Alexander V., Kostryukova, Elena S., Popenko, Anna S., Belenikin, Maxim S., Pavlenko, Alexander V., Larin, Andrey K., Karpova, Irina Y., Selezneva, Oksana V., Semashko, Tatyana A., Ospanova, Elena A., Babenko, Vladislav V., Maev, Igor V., Cheremushkin, Sergey V., Kucheryavyy, Yuriy A., Shcherbakov, Petr L., Grinevich, Vladimir B., Efimov, Oleg I., Sas, Evgenii I., Abdulkhakov, Rustam A., Abdulkhakov, Sayar R., Lyalyukova, Elena A., Livzan, Maria A., Vlassov, Valentin V., Sagdeev, Renad Z., Tsukanov, Vladislav V., Osipenko, Marina F., Kozlova, Irina V., Tkachev, Alexander V., Sergienko, Valery I., Alexeev, Dmitry G., Govorun, Vadim M.
Published in Nature communications (16.09.2013)
Published in Nature communications (16.09.2013)
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Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model
Van den Abbeele, Pieter, Belzer, Clara, Goossens, Margot, Kleerebezem, Michiel, De Vos, Willem M, Thas, Olivier, De Weirdt, Rosemarie, Kerckhof, Frederiek-Maarten, Van de Wiele, Tom
Published in The ISME Journal (01.05.2013)
Published in The ISME Journal (01.05.2013)
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The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates
Zoetendal, Erwin G, Raes, Jeroen, van den Bogert, Bartholomeus, Arumugam, Manimozhiyan, Booijink, Carien CGM, Troost, Freddy J, Bork, Peer, Wels, Michiel, de Vos, Willem M, Kleerebezem, Michiel
Published in The ISME Journal (01.07.2012)
Published in The ISME Journal (01.07.2012)
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Toward defining the autoimmune microbiome for type 1 diabetes
Giongo, Adriana, Gano, Kelsey A, Crabb, David B, Mukherjee, Nabanita, Novelo, Luis L, Casella, George, Drew, Jennifer C, Ilonen, Jorma, Knip, Mikael, Hyöty, Heikki, Veijola, Riitta, Simell, Tuula, Simell, Olli, Neu, Josef, Wasserfall, Clive H, Schatz, Desmond, Atkinson, Mark A, Triplett, Eric W
Published in The ISME Journal (01.01.2011)
Published in The ISME Journal (01.01.2011)
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Microbiota conservation and BMI signatures in adult monozygotic twins
Tims, Sebastian, Derom, Catherine, Jonkers, Daisy M, Vlietinck, Robert, Saris, Wim H, Kleerebezem, Michiel, de Vos, Willem M, Zoetendal, Erwin G
Published in The ISME Journal (01.04.2013)
Published in The ISME Journal (01.04.2013)
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Reprograming of gut microbiome energy metabolism by the FUT2 Crohn’s disease risk polymorphism
Tong, Maomeng, McHardy, Ian, Ruegger, Paul, Goudarzi, Maryam, Kashyap, Purna C, Haritunians, Talin, Li, Xiaoxiao, Graeber, Thomas G, Schwager, Emma, Huttenhower, Curtis, Fornace, Albert J, Sonnenburg, Justin L, McGovern, Dermot PB, Borneman, James, Braun, Jonathan
Published in The ISME Journal (01.11.2014)
Published in The ISME Journal (01.11.2014)
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Spatial heterogeneity and co-occurrence patterns of human mucosal-associated intestinal microbiota
Zhang, Zhigang, Geng, Jiawei, Tang, Xiaodan, Fan, Hong, Xu, Jinchao, Wen, Xiujun, Ma, Zhanshan (Sam), Shi, Peng
Published in The ISME Journal (01.04.2014)
Published in The ISME Journal (01.04.2014)
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Categorization of the gut microbiota: enterotypes or gradients?
Jeffery, Ian B., Claesson, Marcus J., O'Toole, Paul W., Shanahan, Fergus
Published in Nature reviews. Microbiology (01.09.2012)
Published in Nature reviews. Microbiology (01.09.2012)
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Selective induction of human gut-associated acetogenic/butyrogenic microbiota based on specific microbial colonization of indigestible starch granules
Nagara, Yusuke, Fujii, Daichi, Takada, Toshihiko, Sato-Yamazaki, Mikiko, Odani, Toru, Oishi, Kenji
Published in The ISME Journal (01.06.2022)
Published in The ISME Journal (01.06.2022)
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Oral treatment with Eubacterium hallii improves insulin sensitivity in db/db mice
Udayappan, Shanthadevi, Manneras-Holm, Louise, Chaplin-Scott, Alice, Belzer, Clara, Herrema, Hilde, Dallinga-Thie, Geesje M, Duncan, Silvia H, Stroes, Erik S G, Groen, Albert K, Flint, Harry J, Backhed, Fredrik, de Vos, Willem M, Nieuwdorp, Max
Published in NPJ biofilms and microbiomes (06.07.2016)
Published in NPJ biofilms and microbiomes (06.07.2016)
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Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans
Sanapareddy, Nina, Legge, Ryan M, Jovov, Biljana, McCoy, Amber, Burcal, Lauren, Araujo-Perez, Felix, Randall, Thomas A, Galanko, Joseph, Benson, Andrew, Sandler, Robert S, Rawls, John F, Abdo, Zaid, Fodor, Anthony A, Keku, Temitope O
Published in The ISME Journal (01.10.2012)
Published in The ISME Journal (01.10.2012)
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