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Pathological priming causes developmental gene network heterochronicity in autistic subject-derived neurons
Schafer, Simon T., Paquola, Apua C. M., Stern, Shani, Gosselin, David, Ku, Manching, Pena, Monique, Kuret, Thomas J. M., Liyanage, Marvin, Mansour, Abed AlFatah, Jaeger, Baptiste N., Marchetto, Maria C., Glass, Christopher K., Mertens, Jerome, Gage, Fred H.
Published in Nature neuroscience (01.02.2019)
Published in Nature neuroscience (01.02.2019)
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Exploratory study reveals far reaching systemic and cellular effects of verapamil treatment in subjects with type 1 diabetes
Xu, Guanlan, Grimes, Tiffany D., Grayson, Truman B., Chen, Junqin, Thielen, Lance A., Tse, Hubert M., Li, Peng, Kanke, Matt, Lin, Tai-Tu, Schepmoes, Athena A., Swensen, Adam C., Petyuk, Vladislav A., Ovalle, Fernando, Sethupathy, Praveen, Qian, Wei-Jun, Shalev, Anath
Published in Nature communications (03.03.2022)
Published in Nature communications (03.03.2022)
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Mitochondrial Oxidative Phosphorylation defect in the Heart of Subjects with Coronary Artery Disease
Ait-Aissa, Karima, Blaszak, Scott C., Beutner, Gisela, Tsaih, Shirng-Wern, Morgan, Garrett, Santos, Janine H., Flister, Michael J., Joyce, David L., Camara, Amadou K. S., Gutterman, David D., Donato, Anthony J., Porter, George A., Beyer, Andreas M.
Published in Scientific reports (20.05.2019)
Published in Scientific reports (20.05.2019)
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Distinct immune signatures discriminate between asymptomatic and presymptomatic SARS-CoV-2pos subjects
Yu, Shanhe, Di, Caixia, Chen, Shijun, Guo, Mingquan, Yan, Jiayang, Zhu, Zhaoqin, Liu, Li, Feng, Ruixue, Xie, Yinyin, Zhang, Ruihong, Chen, Juan, Wang, Mengxi, Wei, Dong, Fang, Hai, Yin, Tong, Huang, Jinyan, Chen, Saijuan, Lu, Hongzhou, Zhu, Jiang, Qu, Jieming
Published in Cell research (01.11.2021)
Published in Cell research (01.11.2021)
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Key bacterial taxa and metabolic pathways affecting gut short-chain fatty acid profiles in early life
Tsukuda, Naoki, Yahagi, Kana, Hara, Taeko, Watanabe, Yohei, Matsumoto, Hoshitaka, Mori, Hiroshi, Higashi, Koichi, Tsuji, Hirokazu, Matsumoto, Satoshi, Kurokawa, Ken, Matsuki, Takahiro
Published in The ISME Journal (01.09.2021)
Published in The ISME Journal (01.09.2021)
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Transcriptomic analysis of purified human cortical microglia reveals age-associated changes
Galatro, Thais F, Holtman, Inge R, Lerario, Antonio M, Vainchtein, Ilia D, Brouwer, Nieske, Sola, Paula R, Veras, Mariana M, Pereira, Tulio F, Leite, Renata E P, Möller, Thomas, Wes, Paul D, Sogayar, Mari C, Laman, Jon D, den Dunnen, Wilfred, Pasqualucci, Carlos A, Oba-Shinjo, Sueli M, Boddeke, Erik W G M, Marie, Suely K N, Eggen, Bart J L
Published in Nature neuroscience (01.08.2017)
Published in Nature neuroscience (01.08.2017)
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NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data
He, Liang, Davila-Velderrain, Jose, Sumida, Tomokazu S., Hafler, David A., Kellis, Manolis, Kulminski, Alexander M.
Published in Communications Biology (26.05.2021)
Published in Communications Biology (26.05.2021)
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A randomized controlled trial for response of microbiome network to exercise and diet intervention in patients with nonalcoholic fatty liver disease
Cheng, Runtan, Wang, Lu, Le, Shenglong, Yang, Yifan, Zhao, Can, Zhang, Xiangqi, Yang, Xin, Xu, Ting, Xu, Leiting, Wiklund, Petri, Ge, Jun, Lu, Dajiang, Zhang, Chenhong, Chen, Luonan, Cheng, Sulin
Published in Nature communications (10.05.2022)
Published in Nature communications (10.05.2022)
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Transcriptome alterations are enriched for synapse-associated genes in the striatum of subjects with obsessive-compulsive disorder
Piantadosi, Sean C., McClain, Lora L., Klei, Lambertus, Wang, Jiebiao, Chamberlain, Brittany L., Springer, Sara A., Lewis, David A., Devlin, Bernie, Ahmari, Susanne E.
Published in Translational psychiatry (15.03.2021)
Published in Translational psychiatry (15.03.2021)
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Transcriptomic and cellular decoding of regional brain vulnerability to neurogenetic disorders
Seidlitz, Jakob, Nadig, Ajay, Liu, Siyuan, Bethlehem, Richard A. I., Vértes, Petra E., Morgan, Sarah E., Váša, František, Romero-Garcia, Rafael, Lalonde, François M., Clasen, Liv S., Blumenthal, Jonathan D., Paquola, Casey, Bernhardt, Boris, Wagstyl, Konrad, Polioudakis, Damon, de la Torre-Ubieta, Luis, Geschwind, Daniel H., Han, Joan C., Lee, Nancy R., Murphy, Declan G., Bullmore, Edward T., Raznahan, Armin
Published in Nature communications (03.07.2020)
Published in Nature communications (03.07.2020)
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The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
Bolouri, Hamid, Farrar, Jason E, Triche, Jr, Timothy, Ries, Rhonda E, Lim, Emilia L, Alonzo, Todd A, Ma, Yussanne, Moore, Richard, Mungall, Andrew J, Marra, Marco A, Zhang, Jinghui, Ma, Xiaotu, Liu, Yu, Liu, Yanling, Guidry Auvil, Jaime M, Davidsen, Tanja M, Gesuwan, Patee, Hermida, Leandro C, Salhia, Bodour, Capone, Stephen, Ramsingh, Giridharan, Zwaan, Christian Michel, Noort, Sanne, Piccolo, Stephen R, Kolb, E Anders, Gamis, Alan S, Smith, Malcolm A, Gerhard, Daniela S, Meshinchi, Soheil
Published in Nature medicine (01.01.2018)
Published in Nature medicine (01.01.2018)
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Diurnal rhythms in gene expression in the prefrontal cortex in schizophrenia
Seney, Marianne L., Cahill, Kelly, Enwright, John F., Logan, Ryan W., Huo, Zhiguang, Zong, Wei, Tseng, George, McClung, Colleen A.
Published in Nature communications (09.08.2019)
Published in Nature communications (09.08.2019)
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Cortical interneurons in autism
Contractor, Anis, Ethell, Iryna M., Portera-Cailliau, Carlos
Published in Nature neuroscience (01.12.2021)
Published in Nature neuroscience (01.12.2021)
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Genome evolution in the allotetraploid frog Xenopus laevis
Session, Adam M., Uno, Yoshinobu, Kwon, Taejoon, Chapman, Jarrod A., Toyoda, Atsushi, Takahashi, Shuji, Fukui, Akimasa, Hikosaka, Akira, Suzuki, Atsushi, Kondo, Mariko, van Heeringen, Simon J., Quigley, Ian, Heinz, Sven, Ogino, Hajime, Ochi, Haruki, Hellsten, Uffe, Lyons, Jessica B., Simakov, Oleg, Putnam, Nicholas, Stites, Jonathan, Kuroki, Yoko, Tanaka, Toshiaki, Michiue, Tatsuo, Watanabe, Minoru, Bogdanovic, Ozren, Lister, Ryan, Georgiou, Georgios, Paranjpe, Sarita S., van Kruijsbergen, Ila, Shu, Shengquiang, Carlson, Joseph, Kinoshita, Tsutomu, Ohta, Yuko, Mawaribuchi, Shuuji, Jenkins, Jerry, Grimwood, Jane, Schmutz, Jeremy, Mitros, Therese, Mozaffari, Sahar V., Suzuki, Yutaka, Haramoto, Yoshikazu, Yamamoto, Takamasa S., Takagi, Chiyo, Heald, Rebecca, Miller, Kelly, Haudenschild, Christian, Kitzman, Jacob, Nakayama, Takuya, Izutsu, Yumi, Robert, Jacques, Fortriede, Joshua, Burns, Kevin, Lotay, Vaneet, Karimi, Kamran, Yasuoka, Yuuri, Dichmann, Darwin S., Flajnik, Martin F., Houston, Douglas W., Shendure, Jay, DuPasquier, Louis, Vize, Peter D., Zorn, Aaron M., Ito, Michihiko, Marcotte, Edward M., Wallingford, John B., Ito, Yuzuru, Asashima, Makoto, Ueno, Naoto, Matsuda, Yoichi, Veenstra, Gert Jan C., Fujiyama, Asao, Harland, Richard M., Taira, Masanori, Rokhsar, Daniel S.
Published in Nature (London) (20.10.2016)
Published in Nature (London) (20.10.2016)
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Chronic circadian disruption modulates breast cancer stemness and immune microenvironment to drive metastasis in mice
Hadadi, Eva, Taylor, William, Li, Xiao-Mei, Aslan, Yetki, Villote, Marthe, Rivière, Julie, Duvallet, Gaelle, Auriau, Charlotte, Dulong, Sandrine, Raymond-Letron, Isabelle, Provot, Sylvain, Bennaceur-Griscelli, Annelise, Acloque, Hervé
Published in Nature communications (24.06.2020)
Published in Nature communications (24.06.2020)
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SARS-CoV-2 disease severity and transmission efficiency is increased for airborne compared to fomite exposure in Syrian hamsters
Port, Julia R., Yinda, Claude Kwe, Owusu, Irene Offei, Holbrook, Myndi, Fischer, Robert, Bushmaker, Trenton, Avanzato, Victoria A., Schulz, Jonathan E., Martens, Craig, van Doremalen, Neeltje, Clancy, Chad S., Munster, Vincent J.
Published in Nature communications (17.08.2021)
Published in Nature communications (17.08.2021)
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Dysregulated transcriptional responses to SARS-CoV-2 in the periphery
McClain, Micah T., Constantine, Florica J., Henao, Ricardo, Liu, Yiling, Tsalik, Ephraim L., Burke, Thomas W., Steinbrink, Julie M., Petzold, Elizabeth, Nicholson, Bradly P., Rolfe, Robert, Kraft, Bryan D., Kelly, Matthew S., Saban, Daniel R., Yu, Chen, Shen, Xiling, Ko, Emily M., Sempowski, Gregory D., Denny, Thomas N., Ginsburg, Geoffrey S., Woods, Christopher W.
Published in Nature communications (17.02.2021)
Published in Nature communications (17.02.2021)
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Identifying plant genes shaping microbiota composition in the barley rhizosphere
Escudero-Martinez, Carmen, Coulter, Max, Alegria Terrazas, Rodrigo, Foito, Alexandre, Kapadia, Rumana, Pietrangelo, Laura, Maver, Mauro, Sharma, Rajiv, Aprile, Alessio, Morris, Jenny, Hedley, Pete E., Maurer, Andreas, Pillen, Klaus, Naclerio, Gino, Mimmo, Tanja, Barton, Geoffrey J., Waugh, Robbie, Abbott, James, Bulgarelli, Davide
Published in Nature communications (16.06.2022)
Published in Nature communications (16.06.2022)
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ESCRT-dependent STING degradation inhibits steady-state and cGAMP-induced signalling
Gentili, Matteo, Liu, Bingxu, Papanastasiou, Malvina, Dele-Oni, Deborah, Schwartz, Marc A., Carlson, Rebecca J., Al’Khafaji, Aziz M., Krug, Karsten, Brown, Adam, Doench, John G., Carr, Steven A., Hacohen, Nir
Published in Nature communications (04.02.2023)
Published in Nature communications (04.02.2023)
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