Topology-based classification of tetrads and quadruplex structures
Popenda, Mariusz, Miskiewicz, Joanna, Sarzynska, Joanna, Zok , Tomasz, Szachniuk, Marta
Published in Bioinformatics (15.02.2020)
Published in Bioinformatics (15.02.2020)
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Journal Article
Approaches to Distributed Execution of Scientific Workflows in Kepler
Płóciennik, Marcin, Żok, Tomasz, Altintas, Ilkay, Wang, Jianwu, Crawl, Daniel, Abramson, David, Imbeaux, Frederic, Guillerminet, Bernard, Lopez-Caniego, Marcos, Plasencia, Isabel Campos, Pych, Wojciech, Ciecieląg, Pawel, Palak, Bartek, Owsiak, Michał, Frauel, Yann
Published in Fundamenta informaticae (2013)
Published in Fundamenta informaticae (2013)
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Journal Article
Tools, Methods and Services Enhancing the Usage of the Kepler-based Scientific Workflow Framework
Płóciennik, Marcin, Winczewski, Szymon, Ciecieląg, Paweł, Imbeaux, Frederic, Guillerminet, Bernard, Huynh, Philippe, Owsiak, Michał, Spyra, Piotr, Aniel, Thierry, Palak, Bartek, Żok, Tomasz, Pych, Wojciech, Rybicki, Jarosław
Published in Procedia computer science (2014)
Published in Procedia computer science (2014)
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Journal Article
LCS-TA to identify similar fragments in RNA 3D structures
Wiedemann, Jakub, Zok, Tomasz, Milostan, Maciej, Szachniuk, Marta
Published in BMC bioinformatics (23.10.2017)
Published in BMC bioinformatics (23.10.2017)
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Journal Article
Knotted artifacts in predicted 3D RNA structures
Gren, Bartosz A, Antczak, Maciej, Zok, Tomasz, Sulkowska, Joanna I, Szachniuk, Marta
Published in PLoS computational biology (20.06.2024)
Published in PLoS computational biology (20.06.2024)
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Journal Article
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models
Gumna, Julita, Antczak, Maciej, Adamiak, Ryszard W, Bujnicki, Janusz M, Chen, Shi-Jie, Ding, Feng, Ghosh, Pritha, Li, Jun, Mukherjee, Sunandan, Nithin, Chandran, Pachulska-Wieczorek, Katarzyna, Ponce-Salvatierra, Almudena, Popenda, Mariusz, Sarzynska, Joanna, Wirecki, Tomasz, Zhang, Dong, Zhang, Sicheng, Zok, Tomasz, Westhof, Eric, Miao, Zhichao, Szachniuk, Marta, Rybarczyk, Agnieszka
Published in International journal of molecular sciences (25.08.2022)
Published in International journal of molecular sciences (25.08.2022)
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Journal Article
Building the library of RNA 3D nucleotide conformations using the clustering approach
Zok, Tomasz, Antczak, Maciej, Riedel, Martin, Nebel, David, Villmann, Thomas, Lukasiak, Piotr, Blazewicz, Jacek, Szachniuk, Marta
Published in International journal of applied mathematics and computer science (01.09.2015)
Published in International journal of applied mathematics and computer science (01.09.2015)
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Journal Article
WebTetrado: a webserver to explore quadruplexes in nucleic acid 3D structures
Adamczyk, Bartosz, Zurkowski, Michal, Szachniuk, Marta, Zok, Tomasz
Published in Nucleic acids research (05.07.2023)
Published in Nucleic acids research (05.07.2023)
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Journal Article
When will RNA get its AlphaFold moment?
Schneider, Bohdan, Sweeney, Blake Alexander, Bateman, Alex, Cerny, Jiri, Zok, Tomasz, Szachniuk, Marta
Published in Nucleic acids research (13.10.2023)
Published in Nucleic acids research (13.10.2023)
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Journal Article
RNApdbee 2.0: multifunctional tool for RNA structure annotation
Zok, Tomasz, Antczak, Maciej, Zurkowski, Michal, Popenda, Mariusz, Blazewicz, Jacek, Adamiak, Ryszard W, Szachniuk, Marta
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
ONQUADRO: a database of experimentally determined quadruplex structures
Zok, Tomasz, Kraszewska, Natalia, Miskiewicz, Joanna, Pielacinska, Paulina, Zurkowski, Michal, Szachniuk, Marta
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article