ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins
Demeter, Amanda, Romero-Mulero, Mari Carmen, Csabai, Luca, Ölbei, Márton, Sudhakar, Padhmanand, Haerty, Wilfried, Korcsmáros, Tamás
Published in Scientific reports (02.07.2020)
Published in Scientific reports (02.07.2020)
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Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis
Türei, Dénes, Valdeolivas, Alberto, Gul, Lejla, Palacio‐Escat, Nicolàs, Klein, Michal, Ivanova, Olga, Ölbei, Márton, Gábor, Attila, Theis, Fabian, Módos, Dezső, Korcsmáros, Tamás, Saez‐Rodriguez, Julio
Published in Molecular systems biology (01.03.2021)
Published in Molecular systems biology (01.03.2021)
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SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients
Olbei, Marton, Hautefort, Isabelle, Modos, Dezso, Treveil, Agatha, Poletti, Martina, Gul, Lejla, Shannon-Lowe, Claire D, Korcsmaros, Tamas
Published in Frontiers in immunology (01.03.2021)
Published in Frontiers in immunology (01.03.2021)
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SignaLink: Multilayered Regulatory Networks
Csabai, Luca, Ölbei, Márton, Budd, Aidan, Korcsmáros, Tamás, Fazekas, Dávid
Published in Methods in molecular biology (Clifton, N.J.) (2018)
Published in Methods in molecular biology (Clifton, N.J.) (2018)
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SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks
Csabai, Luca, Fazekas, Dávid, Kadlecsik, Tamás, Szalay-Bekő, Máté, Bohár, Balázs, Madgwick, Matthew, Módos, Dezső, Ölbei, Márton, Gul, Lejla, Sudhakar, Padhmanand, Kubisch, János, Oyeyemi, Oyebode James, Liska, Orsolya, Ari, Eszter, Hotzi, Bernadette, Billes, Viktor A, Molnár, Eszter, Földvári-Nagy, László, Csályi, Kitti, Demeter, Amanda, Pápai, Nóra, Koltai, Mihály, Varga, Máté, Lenti, Katalin, Farkas, Illés J, Türei, Dénes, Csermely, Péter, Vellai, Tibor, Korcsmáros, Tamás
Published in Nucleic acids research (07.01.2022)
Published in Nucleic acids research (07.01.2022)
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Journal Article
Evolution of regulatory networks associated with traits under selection in cichlids
Mehta, Tarang K, Koch, Christopher, Nash, Will, Knaack, Sara A, Sudhakar, Padhmanand, Olbei, Marton, Bastkowski, Sarah, Penso-Dolfin, Luca, Korcsmaros, Tamas, Haerty, Wilfried, Roy, Sushmita, Di-Palma, Federica
Published in Genome Biology (08.01.2021)
Published in Genome Biology (08.01.2021)
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P38 Immune checkpoint inhibitor-induced colitis is mediated by CXCR6+ polyfunctional lymphocytes and dependent on IL23/IFNg axis
Lo, Jonathan, Cozzetto, Domenico, Liu, Zhigang, Ibraheim, Hajir, Sieh, Jillian, Olbei, Marton, Alexander, James, Blanco, Jesus Miguens, Madgwick, Matthew, Kudo, Hiromi, Seoane, Rocio Castro, Goldin, Robert, Marchesi, Julian, Korcsmaros, Tamas, Lord, Graham, Powell, Nick
Published in Gut (19.06.2022)
Published in Gut (19.06.2022)
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Immune checkpoint inhibitor-induced colitis is mediated by polyfunctional lymphocytes and is dependent on an IL23/IFNγ axis
Lo, Jonathan W, Cozzetto, Domenico, Alexander, James L, Danckert, Nathan P, Madgwick, Matthew, Knox, Naomi, Sieh, Jillian Yong Xin, Olbei, Marton, Liu, Zhigang, Ibraheim, Hajir, Blanco, Jesus Miguens, Kudo, Hiromi, Seoane, Rocio Castro, Possamai, Lucia A, Goldin, Robert, Marchesi, Julian, Korcsmaros, Tamas, Lord, Graham M, Powell, Nick
Published in Nature communications (23.10.2023)
Published in Nature communications (23.10.2023)
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ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways
Treveil, Agatha, Bohar, Balazs, Sudhakar, Padhmanand, Gul, Lejla, Csabai, Luca, Olbei, Marton, Poletti, Martina, Madgwick, Matthew, Andrighetti, Tahila, Hautefort, Isabelle, Modos, Dezso, Korcsmaros, Tamas
Published in PLoS computational biology (01.02.2021)
Published in PLoS computational biology (01.02.2021)
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The gut microbiota and metabolome are associated with diminished COVID-19 vaccine-induced antibody responses in immunosuppressed inflammatory bowel disease patients
Alexander, James L., Mullish, Benjamin H., Danckert, Nathan P., Liu, Zhigang, Olbei, Marton L., Saifuddin, Aamir, Torkizadeh, Melissa, Ibraheim, Hajir, Blanco, Jesús Miguéns, Roberts, Lauren A., Bewshea, Claire M., Nice, Rachel, Lin, Simeng, Prabhudev, Hemanth, Sands, Caroline, Horneffer-van der Sluis, Verena, Lewis, Matthew, Sebastian, Shaji, Lees, Charlie W., Teare, Julian P., Hart, Ailsa, Goodhand, James R., Kennedy, Nicholas A., Korcsmaros, Tamas, Marchesi, Julian R., Ahmad, Tariq, Powell, Nick
Published in EBioMedicine (01.02.2023)
Published in EBioMedicine (01.02.2023)
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Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists [version 3; peer review: 2 approved]
Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Csabai, Luca, Olbei, Marton, Korcsmáros, Tamás, Szalay-Beko, Mate
Published in F1000 research (2023)
Published in F1000 research (2023)
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Sherlock: an open-source data platform to store, analyze and integrate Big Data for biology [version 1; peer review: 2 approved with reservations]
Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Csabai, Luca, Olbei, Marton, Korcsmáros, Tamás, Szalay-Beko, Mate
Published in F1000 research (2021)
Published in F1000 research (2021)
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Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways
Poletti, Martina, Treveil, Agatha, Csabai, Luca, Gul, Leila, Modos, Dezso, Madgwick, Matthew, Olbei, Marton, Bohar, Balazs, Valdeolivas, Alberto, Turei, Denes, Verstockt, Bram, Triana, Sergio, Alexandrov, Theodore, Saez-Rodriguez, Julio, Stanifer, Megan L, Boulant, Steeve, Korcsmaros, Tamas
Published in NPJ systems biology and applications (02.05.2022)
Published in NPJ systems biology and applications (02.05.2022)
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Sherlock: an open-source data platform to store, analyze and integrate Big Data for computational biologists [version 2; peer review: 2 approved]
Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Csabai, Luca, Olbei, Marton, Korcsmáros, Tamás, Szalay-Beko, Mate
Published in F1000 research (2021)
Published in F1000 research (2021)
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Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level
Olbei, Marton, Bohar, Balazs, Fazekas, David, Madgwick, Matthew, Sudhakar, Padhmanand, Hautefort, Isabelle, Métris, Aline, Baranyi, Jozsef, Kingsley, Robert A, Korcsmaros, Tamas
Published in mSystems (30.08.2022)
Published in mSystems (30.08.2022)
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CytokineLink: A Cytokine Communication Map to Analyse Immune Responses-Case Studies in Inflammatory Bowel Disease and COVID-19
Olbei, Marton, Thomas, John P, Hautefort, Isabelle, Treveil, Agatha, Bohar, Balazs, Madgwick, Matthew, Gul, Lejla, Csabai, Luca, Modos, Dezso, Korcsmaros, Tamas
Published in Cells (Basel, Switzerland) (29.08.2021)
Published in Cells (Basel, Switzerland) (29.08.2021)
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SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation
Métris, Aline, Sudhakar, Padhmanand, Fazekas, David, Demeter, Amanda, Ari, Eszter, Olbei, Marton, Branchu, Priscilla, Kingsley, Rob A, Baranyi, Jozsef, Korcsmáros, Tamas
Published in NPJ systems biology and applications (01.01.2017)
Published in NPJ systems biology and applications (01.01.2017)
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Tu1761 GENE CORRELATION NETWORK ANALYSES REVEAL TRANSCRIPT MODULES AND PATHOGENIC MECHANISMS ASSOCIATED WITH RESISTANCE AND RESPONSE TO USTEKINUMAB THERAPY IN ULCERATIVE COLITIS
Saifuddin, Aamir, Cozzetto, Domenico, Olbei, Marton, Pavlidis, Polychronis, Hart, Ailsa, Korcsmaros, Tamas, Powell, Nick
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
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340 BEYOND ATG16L1: MULTIPLE NON-CODING SNPS PERTURB AUTOPHAGY AND STRATIFY IBD PATIENTS INTO DISTINCT SUBGROUPS
Csabai, Luca, Modos, Dezso, Bohar, Balazs, Olbei, Marton, Gul, Lejla, Thomas, John, Verstockt, Bram, Korcsmaros, Tamas
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
Published in Gastroenterology (New York, N.Y. 1943) (18.05.2024)
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