Chemical language modeling with structured state space sequence models
Özçelik, Rıza, de Ruiter, Sarah, Criscuolo, Emanuele, Grisoni, Francesca
Published in Nature communications (22.07.2024)
Published in Nature communications (22.07.2024)
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Deep learning for low-data drug discovery: Hurdles and opportunities
van Tilborg, Derek, Brinkmann, Helena, Criscuolo, Emanuele, Rossen, Luke, Özçelik, Rıza, Grisoni, Francesca
Published in Current opinion in structural biology (01.06.2024)
Published in Current opinion in structural biology (01.06.2024)
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ChemBoost: A Chemical Language Based Approach for Protein – Ligand Binding Affinity Prediction
Özçelik, Rıza, Öztürk, Hakime, Özgür, Arzucan, Ozkirimli, Elif
Published in Molecular informatics (01.05.2021)
Published in Molecular informatics (01.05.2021)
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Building efficient and effective OpenQA systems for low-resource languages
Budur, Emrah, Özçelik, Rıza, Soylu, Dilara, Khattab, Omar, Güngör, Tunga, Potts, Christopher
Published in Knowledge-based systems (25.10.2024)
Published in Knowledge-based systems (25.10.2024)
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Exploring data‐driven chemical SMILES tokenization approaches to identify key protein–ligand binding moieties
Temizer, Asu Busra, Uludoğan, Gökçe, Özçelik, Rıza, Koulani, Taha, Ozkirimli, Elif, Ulgen, Kutlu O., Karali, Nilgun, Özgür, Arzucan
Published in Molecular informatics (01.03.2024)
Published in Molecular informatics (01.03.2024)
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Journal Article
Predicting Metabolic Reactions with a Molecular Transformer for Drug Design Optimization
Multari, Silvia, Ozcelik, Riza, Mazzolari, Angelica, Nobile, Marco Salvatore, Grisoni, Francesca
Published in 2024 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) (27.08.2024)
Published in 2024 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) (27.08.2024)
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Conference Proceeding
User Interface for Turkish Word Network KeNet
Ozcelik, Riza, Uludogan, Gokce, Parlar, Selen, Bakay, Ozge, Ergelen, Ozlem, Yildiz, Olcay Taner
Published in 2019 27th Signal Processing and Communications Applications Conference (SIU) (01.04.2019)
Published in 2019 27th Signal Processing and Communications Applications Conference (SIU) (01.04.2019)
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Conference Proceeding
Data Set Generation for Analysing of Turkish Semantic and Sentence Similarity
Ercan, Gokhan, Erkek, Orcun, Acikgoz, Onur, Ozcelik, Riza, Parlar, Selen, Yildiz, Olcay Taner
Published in 2018 3rd International Conference on Computer Science and Engineering (UBMK) (01.09.2018)
Published in 2018 3rd International Conference on Computer Science and Engineering (UBMK) (01.09.2018)
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Conference Proceeding
Structure-based drug discovery with deep learning
Özçelik, Rıza, van Tilborg, Derek, Jiménez-Luna, José, Grisoni, Francesca
Year of Publication 26.12.2022
Year of Publication 26.12.2022
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Journal Article
Building Efficient and Effective OpenQA Systems for Low-Resource Languages
Budur, Emrah, Özçelik, Rıza, Soylu, Dilara, Khattab, Omar, Güngör, Tunga, Potts, Christopher
Year of Publication 07.01.2024
Year of Publication 07.01.2024
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Journal Article
Vapur: A Search Engine to Find Related Protein-Compound Pairs in COVID-19 Literature
Köksal, Abdullatif, Dönmez, Hilal, Özçelik, Rıza, Ozkirimli, Elif, Özgür, Arzucan
Year of Publication 05.09.2020
Year of Publication 05.09.2020
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Journal Article
Exploring Data-Driven Chemical SMILES Tokenization Approaches to Identify Key Protein-Ligand Binding Moieties
Temizer, Asu Büşra, Uludoğan, Gökçe, Özçelik, Rıza, Koulani, Taha, Ozkirimli, Elif, Ulgen, Kutlu O, Karalı, Nilgün, Özgür, Arzucan
Year of Publication 26.10.2022
Year of Publication 26.10.2022
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Journal Article
DebiasedDTA: A Framework for Improving the Generalizability of Drug-Target Affinity Prediction Models
Özçelik, Rıza, Bağ, Alperen, Atıl, Berk, Barsbey, Melih, Özgür, Arzucan, Özkırımlı, Elif
Year of Publication 04.07.2021
Year of Publication 04.07.2021
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