Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
Haas, Brian J., Delcher, Arthur L., Mount, Stephen M., Wortman, Jennifer R., Smith Jr, Roger K., Hannick, Linda I., Maiti, Rama, Ronning, Catherine M., Rusch, Douglas B., Town, Christopher D., Salzberg, Steven L., White, Owen
Published in Nucleic acids research (01.10.2003)
Published in Nucleic acids research (01.10.2003)
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Journal Article
Use of RNA and Genomic DNA References for Inferred Comparisons in DNA Microarray Analyses
Kim, H, Zhao, B, Snesrud, E.C, Haas, B.J, Town, C.D, Quackenbush, J
Published in BioTechniques (01.10.2002)
Published in BioTechniques (01.10.2002)
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Journal Article
Proteome Map of the Chloroplast Lumen of Arabidopsis thaliana
Schubert, Maria, Petersson, Ulrika A., Haas, Brian J., Funk, Christiane, Schröder, Wolfgang P., Kieselbach, Thomas
Published in The Journal of biological chemistry (08.03.2002)
Published in The Journal of biological chemistry (08.03.2002)
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Journal Article
A Catalog of Reference Genomes from the Human Microbiome
Nelson, Karen E, Weinstock, George M, Highlander, Sarah K, Worley, Kim C, Creasy, Heather Huot, Wortman, Jennifer Russo, Rusch, Douglas B, Mitreva, Makedonka, Sodergren, Erica, Chinwalla, Asif T, Feldgarden, Michael, Gevers, Dirk, Haas, Brian J, Madupu, Ramana, Ward, Doyle V, Birren, Bruce W, Gibbs, Richard A, Methe, Barbara, Petrosino, Joseph F, Strausberg, Robert L, Sutton, Granger G, White, Owen R, Wilson, Richard K, Durkin, Scott, Giglio, Michelle Gwinn, Gujja, Sharvari, Howarth, Clint, Kodira, Chinnappa D, Kyrpides, Nikos, Mehta, Teena, Muzny, Donna M, Pearson, Matthew, Pepin, Kymberlie, Pati, Amrita, Qin, Xiang, Yandava, Chandri, Zeng, Qiandong, Zhang, Lan, Berlin, Aaron M, Chen, Lei, Hepburn, Theresa A, Johnson, Justin, McCorrison, Jamison, Miller, Jason, Minx, Pat, Nusbaum, Chad, Russ, Carsten, Sykes, Sean M, Tomlinson, Chad M, Young, Sarah, Warren, Wesley C, Badger, Jonathan, Crabtree, Jonathan, Markowitz, Victor M, Orvis, Joshua, Cree, Andrew, Ferriera, Steve, Fulton, Lucinda L, Fulton, Robert S, Gillis, Marcus, Hemphill, Lisa D, Joshi, Vandita, Kovar, Christie, Torralba, Manolito, Wetterstrand, Kris A, Abouellleil, Amr, Wollam, Aye M, Buhay, Christian J, Ding, Yan, Dugan, Shannon, FitzGerald, Michael G, Holder, Mike, Hostetler, Jessica, Clifton, Sandra W, Allen-Vercoe, Emma, Earl, Ashlee M, Farmer, Candace N, Liolios, Konstantinos, Surette, Michael G, Xu, Qiang, Pohl, Craig, Wilczek-Boney, Katarzyna, Zhu, Dianhui
Published in Science (American Association for the Advancement of Science) (21.05.2010)
Published in Science (American Association for the Advancement of Science) (21.05.2010)
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Journal Article
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
Grad, Yonatan H, Lipsitch, Marc, Feldgarden, Michael, Arachchi, Harindra M, Cerqueira, Gustavo C, FitzGerald, Michael, Godfrey, Paul, Haas, Brian J, Murphy, Cheryl I, Russ, Carsten, Sykes, Sean, Walker, Bruce J, Wortman, Jennifer R, Young, Sarah, Zeng, Qiandong, Abouelleil, Amr, Bochicchio, James, Chauvin, Sara, DeSmet, Timothy, Gujja, Sharvari, McCowan, Caryn, Montmayeur, Anna, Steelman, Scott, Frimodt-Møller, Jakob, Petersen, Andreas M, Struve, Carsten, Krogfelt, Karen A, Bingen, Edouard, Weill, François-Xavier, Lander, Eric S, Nusbaum, Chad, Birren, Bruce W, Hung, Deborah T, Hanage, William P
Published in Proceedings of the National Academy of Sciences - PNAS (21.02.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (21.02.2012)
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Journal Article
Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen
Grad, Yonatan H, Godfrey, Paul, Cerquiera, Gustavo C, Mariani-Kurkdjian, Patricia, Gouali, Malika, Bingen, Edouard, Shea, Terrence P, Haas, Brian J, Griggs, Allison, Young, Sarah, Zeng, Qiandong, Lipsitch, Marc, Waldor, Matthew K, Weill, François-Xavier, Wortman, Jennifer R, Hanage, William P
Published in mBio (22.01.2013)
Published in mBio (22.01.2013)
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Journal Article
Comparative Functional Genomics of the Fission Yeasts
Rhind, Nicholas, Chen, Zehua, Yassour, Moran, Thompson, Dawn A., Haas, Brian J., Habib, Naomi, Wapinski, Ilan, Roy, Sushmita, Lin, Michael F., Heiman, David I., Young, Sarah K., Furuya, Kanji, Guo, Yabin, Pidoux, Alison, Chen, Huei Mei, Robbertse, Barbara, Goldberg, Jonathan M., Aoki, Keita, Bayne, Elizabeth H., Berlin, Aaron M., Desjardins, Christopher A., Dobbs, Edward, Dukaj, Livio, Fan, Lin, FitzGerald, Michael G., French, Courtney, Gujja, Sharvari, Hansen, Klavs, Keifenheim, Dan, Levin, Joshua Z., Mosher, Rebecca A., Müller, Carolin A., Pfiffner, Jenna, Priest, Margaret, Russ, Carsten, Smialowska, Agata, Swoboda, Peter, Sykes, Sean M., Vaughn, Matthew, Vengrova, Sonya, Yoder, Ryan, Zeng, Qiandong, Allshire, Robin, Baulcombe, David, Birren, Bruce W., Brown, William, Ekwall, Karl, Kellis, Manolis, Leatherwood, Janet, Levin, Henry, Margalit, Hanah, Martienssen, Rob, Nieduszynski, Conrad A., Spatafora, Joseph W., Friedman, Nir, Dalgaard, Jacob Z., Baumann, Peter, Niki, Hironori, Regev, Aviv, Nusbaum, Chad
Published in Science (American Association for the Advancement of Science) (20.05.2011)
Published in Science (American Association for the Advancement of Science) (20.05.2011)
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Journal Article
Compilation of mRNA Polyadenylation Signals in Arabidopsis Revealed a New Signal Element and Potential Secondary Structures
Loke, Johnny C, Stahlberg, Eric A, Strenski, David G, Haas, Brian J, Wood, Paul Chris, Li, Qingshun Quinn
Published in Plant physiology (Bethesda) (01.07.2005)
Published in Plant physiology (Bethesda) (01.07.2005)
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Journal Article
Annotation of the Arabidopsis genome
Wortman, J.R, Haas, B.J, Hannick, L.I, Smith, R.K. Jr, Maiti, R, Ronning, C.M, Chan, A.P, Yu, C, Ayele, M, Whitelaw, C.A
Published in Plant physiology (Bethesda) (01.06.2003)
Published in Plant physiology (Bethesda) (01.06.2003)
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Journal Article
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release
Haas, Brian J, Wortman, Jennifer R, Ronning, Catherine M, Hannick, Linda I, Smith, Jr, Roger K, Maiti, Rama, Chan, Agnes P, Yu, Chunhui, Farzad, Maryam, Wu, Dongying, White, Owen, Town, Christopher D
Published in BMC biology (22.03.2005)
Published in BMC biology (22.03.2005)
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Journal Article
Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis
Ayele, Mulu, Haas, Brian J, Kumar, Nikhil, Wu, Hank, Xiao, Yongli, Van Aken, Susan, Utterback, Teresa R, Wortman, Jennifer R, White, Owen R, Town, Christopher D
Published in Genome research (01.04.2005)
Published in Genome research (01.04.2005)
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Journal Article
Analysis of the cDNAs of Hypothetical Genes on Arabidopsis Chromosome 2 Reveals Numerous Transcript Variants
Xiao, Yong-Li, Smith, Shannon R, Ishmael, Nadeeza, Redman, Julia C, Kumar, Nihkil, Monaghan, Erin L, Ayele, Mulu, Haas, Brian J, Wu, Hank C, Town, Christopher D
Published in Plant physiology (Bethesda) (01.11.2005)
Published in Plant physiology (Bethesda) (01.11.2005)
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Journal Article
Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome
Kim, H.S, Yu, Y, Snesrud, E.C, Moy, L.P, Linford, L.D, Haas, B.J, Nierman, W.C, Quackenbush, J
Published in The Plant journal : for cell and molecular biology (01.01.2005)
Published in The Plant journal : for cell and molecular biology (01.01.2005)
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Journal Article
Analysis of the European results on the HTTR’s core physics benchmarks
Raepsaet, X, Damian, F, Ohlig, U.A, Brockmann, H.J, de Haas, J.B.M, Wallerbos, E.M
Published in Nuclear engineering and design (01.06.2003)
Published in Nuclear engineering and design (01.06.2003)
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Journal Article
Conference Proceeding