Similarity of the dog and human gut microbiomes in gene content and response to diet
Coelho, Luis Pedro, Kultima, Jens Roat, Costea, Paul Igor, Fournier, Coralie, Pan, Yuanlong, Czarnecki-Maulden, Gail, Hayward, Matthew Robert, Forslund, Sofia K, Schmidt, Thomas Sebastian Benedikt, Descombes, Patrick, Jackson, Janet R, Li, Qinghong, Bork, Peer
Published in Microbiome (19.04.2018)
Published in Microbiome (19.04.2018)
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Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data
Diep, Benjamin, Barretto, Caroline, Portmann, Anne-Catherine, Fournier, Coralie, Karczmarek, Aneta, Voets, Guido, Li, Shaoting, Deng, Xiangyu, Klijn, Adrianne
Published in Frontiers in Microbiology (11.11.2019)
Published in Frontiers in Microbiology (11.11.2019)
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A Validation Approach of an End-to-End Whole Genome Sequencing Workflow for Source Tracking of Listeria monocytogenes and Salmonella enterica
Portmann, Anne-Catherine, Fournier, Coralie, Gimonet, Johan, Ngom-Bru, Catherine, Barretto, Caroline, Baert, Leen
Published in Frontiers in microbiology (14.03.2018)
Published in Frontiers in microbiology (14.03.2018)
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Journal Article
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago
Raharimalala, Nathalie, Rombauts, Stephane, McCarthy, Andrew, Garavito, Andréa, Orozco-Arias, Simon, Bellanger, Laurence, Morales-Correa, Alexa Yadira, Froger, Solène, Michaux, Stéphane, Berry, Victoria, Metairon, Sylviane, Fournier, Coralie, Lepelley, Maud, Mueller, Lukas, Couturon, Emmanuel, Hamon, Perla, Rakotomalala, Jean-Jacques, Descombes, Patrick, Guyot, Romain, Crouzillat, Dominique
Published in Scientific reports (14.04.2021)
Published in Scientific reports (14.04.2021)
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Journal Article
Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions
de Castro Nunes, Renata, Orozco-Arias, Simon, Crouzillat, Dominique, Mueller, Lukas A, Strickler, Suzy R, Descombes, Patrick, Fournier, Coralie, Moine, Deborah, de Kochko, Alexandre, Yuyama, Priscila M, Vanzela, André L L, Guyot, Romain
Published in Frontiers in plant science (15.02.2018)
Published in Frontiers in plant science (15.02.2018)
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Journal Article
Antibiotic Treatment Leads to Fecal Escherichia coli and Coliphage Expansion in Severely Malnourished Diarrhea Patients
Kieser, Silas, Sarker, Shafiqul A, Berger, Bernard, Sultana, Shamima, Chisti, Mohammod J, Islam, Shoeb B, Foata, Francis, Porta, Nadine, Betrisey, Bertrand, Fournier, Coralie, Descombes, Patrick, Mercenier, Annick, Sakwinska, Olga, Brüssow, Harald
Published in CMGH (01.01.2018)
Published in CMGH (01.01.2018)
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Journal Article
Whole genome sequencing used in an industrial context reveals a Salmonella laboratory cross-contamination
Rouzeau-Szynalski, Katia, Barretto, Caroline, Fournier, Coralie, Moine, Deborah, Gimonet, Johan, Baert, Leen
Published in International journal of food microbiology (02.06.2019)
Published in International journal of food microbiology (02.06.2019)
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Journal Article
Bangladeshi children with acute diarrhoea show faecal microbiomes with increased Streptococcus abundance, irrespective of diarrhoea aetiology
Kieser, Silas, Sarker, Shafiqul A., Sakwinska, Olga, Foata, Francis, Sultana, Shamima, Khan, Zeenat, Islam, Shoheb, Porta, Nadine, Combremont, Séverine, Betrisey, Bertrand, Fournier, Coralie, Charpagne, Aline, Descombes, Patrick, Mercenier, Annick, Berger, Bernard, Brüssow, Harald
Published in Environmental microbiology (01.06.2018)
Published in Environmental microbiology (01.06.2018)
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Journal Article
Ecological and genomic vulnerability to climate change across native populations of Robusta coffee (Coffea canephora)
Tournebize, Rémi, Borner, Leyli, Manel, Stéphanie, Meynard, Christine N., Vigouroux, Yves, Crouzillat, Dominique, Fournier, Coralie, Kassam, Mohamed, Descombes, Patrick, Tranchant‐Dubreuil, Christine, Parrinello, Hugues, Kiwuka, Catherine, Sumirat, Ucu, Legnate, Hyacinthe, Kambale, Jean‐Léon, Sonké, Bonaventure, Mahinga, Jose Cassule, Musoli, Pascal, Janssens, Steven B., Stoffelen, Piet, Kochko, Alexandre, Poncet, Valérie
Published in Global change biology (01.07.2022)
Published in Global change biology (01.07.2022)
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Journal Article
Optimization of subculture and DNA extraction steps within the whole genome sequencing workflow for source tracking of Salmonella enterica and Listeria monocytogenes
Gimonet, Johan, Portmann, Anne-Catherine, Fournier, Coralie, Baert, Leen
Published in Journal of microbiological methods (01.08.2018)
Published in Journal of microbiological methods (01.08.2018)
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Journal Article
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
Salojärvi, Jarkko, Rambani, Aditi, Yu, Zhe, Guyot, Romain, Strickler, Susan, Lepelley, Maud, Wang, Cui, Rajaraman, Sitaram, Rastas, Pasi, Zheng, Chunfang, Muñoz, Daniella Santos, Meidanis, João, Paschoal, Alexandre Rossi, Bawin, Yves, Krabbenhoft, Trevor J., Wang, Zhen Qin, Fleck, Steven J., Aussel, Rudy, Bellanger, Laurence, Charpagne, Aline, Fournier, Coralie, Kassam, Mohamed, Lefebvre, Gregory, Métairon, Sylviane, Moine, Déborah, Rigoreau, Michel, Stolte, Jens, Hamon, Perla, Couturon, Emmanuel, Tranchant-Dubreuil, Christine, Mukherjee, Minakshi, Lan, Tianying, Engelhardt, Jan, Stadler, Peter, Correia De Lemos, Samara Mireza, Suzuki, Suzana Ivamoto, Sumirat, Ucu, Wai, Ching Man, Dauchot, Nicolas, Orozco-Arias, Simon, Garavito, Andrea, Kiwuka, Catherine, Musoli, Pascal, Nalukenge, Anne, Guichoux, Erwan, Reinout, Havinga, Smit, Martin, Carretero-Paulet, Lorenzo, Filho, Oliveiro Guerreiro, Braghini, Masako Toma, Padilha, Lilian, Sera, Gustavo Hiroshi, Ruttink, Tom, Henry, Robert, Marraccini, Pierre, Van de Peer, Yves, Andrade, Alan, Domingues, Douglas, Giuliano, Giovanni, Mueller, Lukas, Pereira, Luiz Filipe, Plaisance, Stephane, Poncet, Valerie, Rombauts, Stephane, Sankoff, David, Albert, Victor A., Crouzillat, Dominique, de Kochko, Alexandre, Descombes, Patrick
Published in Nature genetics (01.04.2024)
Published in Nature genetics (01.04.2024)
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Journal Article
Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee)
Charr, Jean-Claude, Garavito, Andrea, Guyeux, Christophe, Crouzillat, Dominique, Descombes, Patrick, Fournier, Coralie, Ly, Serigne N., Raharimalala, Eva N., Rakotomalala, Jean-Jacques, Stoffelen, Piet, Janssens, Steven, Hamon, Perla, Guyot, Romain
Published in Molecular phylogenetics and evolution (01.10.2020)
Published in Molecular phylogenetics and evolution (01.10.2020)
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Journal Article
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
Salojaervi, Jarkko, Rambani, Aditi, Yu, Zhe, Guyot, Romain, Strickler, Susan, Lepelley, Maud, Wang, Cui, Rajaraman, Sitaram, Rastas, Pasi, Zheng, Chunfang, Munoz, Daniella Santos, Meidanis, Joao, Paschoal, Alexandre Rossi, Bawin, Yves, Krabbenhoft, Trevor J, Wang, Zhen Qin, Fleck, Steven J, Aussel, Rudy, Bellanger, Laurence, Charpagne, Aline, Fournier, Coralie, Kassam, Mohamed, Lefebvre, Gregory, Metairon, Sylviane, Moine, Deborah, Rigoreau, Michel, Stolte, Jens, Hamon, Perla, Couturon, Emmanuel, Tranchant-Dubreuil, Christine, Mukherjee, Minakshi, Lan, Tianying, Engelhardt, Jan, Stadler, Peter, Correia De Lemos, Samara Mireza, Suzuki, Suzana Ivamoto, Sumirat, Ucu, Wai, Ching Man, Dauchot, Nicolas, Orozco-Arias, Simon, Garavito, Andrea, Kiwuka, Catherine, Musoli, Pascal, Nalukenge, Anne, Guichoux, Erwan, Reinout, Havinga, Smit, Martin, Carretero-Paulet, Lorenzo, Filho, Oliveiro Guerreiro, Braghini, Masako Toma, Padilha, Lilian, Sera, Gustavo Hiroshi, Ruttink, Tom, Henry, Robert, Marraccini, Pierre, van de Peer, Yves, Andrade, Alan, Domingues, Douglas, Giuliano, Giovanni, Mueller, Lukas, Pereira, Luiz Filipe, Plaisance, Stephane, Poncet, Valerie, Rombauts, Stephane, Sankoff, David, Albert, Victor A, Crouzillat, Dominique, de Kochko, Alexandre, Descombes, Patrick
Published in NATURE GENETICS (01.04.2024)
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Published in NATURE GENETICS (01.04.2024)
Journal Article
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
Salojärvi, Jarkko, Rambani, Aditi, Yu, Zhe, Guyot, Romain, Strickler, Susan, Lepelley, Maud, Wang, Cui, Rajaraman, Sitaram, Rastas, Pasi, Zheng, Chunfang, Muñoz, Daniella Santos, Meidanis, João, Paschoal, Alexandre Rossi, Bawin, Yves, Krabbenhoft, Trevor J, Wang, Zhen Qin, Fleck, Steven J, Aussel, Rudy, Bellanger, Laurence, Charpagne, Aline, Fournier, Coralie, Kassam, Mohamed, Lefebvre, Gregory, Métairon, Sylviane, Moine, Déborah, Rigoreau, Michel, Stolte, Jens, Hamon, Perla, Couturon, Emmanuel, Tranchant-Dubreuil, Christine, Mukherjee, Minakshi, Lan, Tianying, Engelhardt, Jan, Stadler, Peter, Correia De Lemos, Samara Mireza, Suzuki, Suzana Ivamoto, Sumirat, Ucu, Wai, Ching Man, Dauchot, Nicolas, Orozco-Arias, Simon, Garavito, Andrea, Kiwuka, Catherine, Musoli, Pascal, Nalukenge, Anne, Guichoux, Erwan, Reinout, Havinga, Smit, Martin, Carretero-Paulet, Lorenzo, Filho, Oliveiro Guerreiro, Braghini, Masako Toma, Padilha, Lilian, Sera, Gustavo Hiroshi, Ruttink, Tom, Henry, Robert, Marraccini, Pierre, Van de Peer, Yves, Andrade, Alan, Domingues, Douglas, Giuliano, Giovanni, Mueller, Lukas, Pereira, Luiz Filipe, Plaisance, Stephane, Poncet, Valerie, Rombauts, Stephane, Sankoff, David, Albert, Victor A, Crouzillat, Dominique, de Kochko, Alexandre, Descombes, Patrick
Year of Publication 2024
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Year of Publication 2024
Journal Article
Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee)
Charr, Jean-Claude, Garavito, Andrea, Guyeux, Christophe, Crouzillat, Dominique, Descombes, Patrick, Fournier, Coralie, Ly, Serigne N, Raharimalala, Eva N, Rakotomalala, Jean-Jacques, Stoffelen, Piet, Janssens, Steven, Hamon, Perla, Guyot, Romain
Published in MOLECULAR PHYLOGENETICS AND EVOLUTION (01.10.2020)
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Published in MOLECULAR PHYLOGENETICS AND EVOLUTION (01.10.2020)
Journal Article
Development and evaluation of a genome‐wide Coffee 8.5K SNP array and its application for high‐density genetic mapping and for investigating the origin of Coffea arabica L
Merot‐L'anthoene, Virginie, Tournebize, Rémi, Darracq, Olivier, Rattina, Vimel, Lepelley, Maud, Bellanger, Laurence, Tranchant‐Dubreuil, Christine, Coulée, Manon, Pégard, Marie, Metairon, Sylviane, Fournier, Coralie, Stoffelen, Piet, Janssens, Steven B., Kiwuka, Catherine, Musoli, Pascal, Sumirat, Ucu, Legnaté, Hyacinthe, Kambale, Jean‐Léon, Ferreira da Costa Neto, João, Revel, Clara, de Kochko, Alexandre, Descombes, Patrick, Crouzillat, Dominique, Poncet, Valérie
Published in Plant biotechnology journal (01.07.2019)
Published in Plant biotechnology journal (01.07.2019)
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Journal Article
The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago
Raharimalala, Nathalie, Rombauts, Stephane, McCarthy, Andrew, Garavito, Andréa, Orozco-Arias, Simon, Bellanger, Laurence, Morales-Correa, Alexa Yadira, Froger, Solène, Michaux, Stéphane, Berry, Victoria, Metairon, Sylviane, Fournier, Coralie, Lepelley, Maud, Mueller, Lukas, Couturon, Emmanuel, Hamon, Perla, Rakotomalala, Jean-Jacques, Descombes, Patrick, Guyot, Romain, Crouzillat, Dominique
Year of Publication 2021
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Year of Publication 2021
Journal Article
Bangladeshi children with acute diarrhoea show faecal microbiomes with increased Streptococcus abundance, irrespective of diarrhoea aetiology
Kieser, Silas, Sarker, Shafiqul A, Sakwinska, Olga, Foata, Francis, Sultana, Shamima, Khan, Zeenat, Islam, Shoheb, Porta, Nadine, Combremont, Severine, Betrisey, Bertrand, Fournier, Coralie, Charpagne, Aline, Descombes, Patrick, Mercenier, Annick, Berger, Bernard, Brussow, Harald
Published in ENVIRONMENTAL MICROBIOLOGY (01.06.2018)
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Published in ENVIRONMENTAL MICROBIOLOGY (01.06.2018)
Journal Article
Genome Sequence of Lactobacillus fermentum Strain NCC2970 (CNCM I-5068)
Barretto, Caroline, Ngom-Bru, Catherine, Genevaz, Alienor, Fournier, Coralie, Moine, Deborah, Kassam, Mohamed, Iltis, Agnes, Sagory-Zalkind, Pierre, Ciron, Pierre-Emmanuel, Faucherand, Gilles, Descombes, Patrick, Duboux, Stephane
Published in Genome announcements (17.11.2016)
Published in Genome announcements (17.11.2016)
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