BicAT: a biclustering analysis toolbox
Barkow, Simon, Bleuler, Stefan, Prelić, Amela, Zimmermann, Philip, Zitzler, Eckart
Published in Bioinformatics (15.05.2006)
Published in Bioinformatics (15.05.2006)
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Journal Article
Pathogens and host immunity in the ancient human oral cavity
Warinner, Christina, Rodrigues, João F Matias, Vyas, Rounak, Trachsel, Christian, Shved, Natallia, Grossmann, Jonas, Radini, Anita, Hancock, Y, Tito, Raul Y, Fiddyment, Sarah, Speller, Camilla, Hendy, Jessica, Charlton, Sophy, Luder, Hans Ulrich, Salazar-García, Domingo C, Eppler, Elisabeth, Seiler, Roger, Hansen, Lars H, Castruita, José Alfredo Samaniego, Barkow-Oesterreicher, Simon, Teoh, Kai Yik, Kelstrup, Christian D, Olsen, Jesper V, Nanni, Paolo, Kawai, Toshihisa, Willerslev, Eske, von Mering, Christian, Lewis, Cecil M, Collins, Matthew J, Gilbert, M Thomas P, Rühli, Frank, Cappellini, Enrico
Published in Nature Genetics (01.04.2014)
Published in Nature Genetics (01.04.2014)
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Journal Article
The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions
Vazquez-Gutierrez, Pamela, Stevens, Marc J A, Gehrig, Peter, Barkow-Oesterreicher, Simon, Lacroix, Christophe, Chassard, Christophe
Published in BMC Genomics (06.01.2017)
Published in BMC Genomics (06.01.2017)
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Journal Article
FCC – An automated rule-based processing tool for life science data
Barkow-Oesterreicher, Simon, Türker, Can, Panse, Christian
Published in Source Code for Biology and Medicine (11.01.2013)
Published in Source Code for Biology and Medicine (11.01.2013)
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Journal Article
Insights into the Gene Expression Profile of Uncultivable Hemotrophic Mycoplasma suis during Acute Infection, Obtained Using Proteome Analysis
FELDER, Kathrin M, CARRANZA, Paula M, GEHRIG, Peter M, ROSCHITZKI, Bernd, BARKOW-OESTERREICHER, Simon, HOELZLE, Katharina, RIEDEL, Katharina, KUBE, Michael, HOELZLE, Ludwig E
Published in Journal of Bacteriology (01.03.2012)
Published in Journal of Bacteriology (01.03.2012)
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Journal Article
Proteomic profiling of Cronobacter turicensis 3032, a food-borne opportunistic pathogen
Carranza, Paula, Hartmann, Isabel, Lehner, Angelika, Stephan, Roger, Gehrig, Peter, Grossmann, Jonas, Barkow-Oesterreicher, Simon, Roschitzki, Bernd, Eberl, Leo, Riedel, Kathrin
Published in Proteomics (Weinheim) (01.07.2009)
Published in Proteomics (Weinheim) (01.07.2009)
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Journal Article
Network analysis of systems elements
Schöner, Daniel, Simon, Barkow, Bleuler, Stefan, Wille, Anja, Zimmermann, Philip, Bühlmann, Peter, Gruissem, Wilhelm, Zitzler, Eckart
Published in EXS (Basel) (2007)
Published in EXS (Basel) (2007)
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Book Chapter
Journal Article
BicAT: A biclustering analysis toolbox
Barkow, Simon, Bleuler, Stefan, Prelić, Amela, Zimmermann, Philip, Zitzler, Eckart
Published in Bioinformatics (15.05.2006)
Published in Bioinformatics (15.05.2006)
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Journal Article
Implementation and evaluation of relative and absolute quantification in shotgun proteomics with label-free methods
Grossmann, Jonas, Roschitzki, Bernd, Panse, Christian, Fortes, Claudia, Barkow-Oesterreicher, Simon, Rutishauser, Dorothea, Schlapbach, Ralph
Published in Journal of proteomics (05.08.2010)
Published in Journal of proteomics (05.08.2010)
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Journal Article
Sorbitol Dehydrogenase Overexpression and Other Aspects of Dysregulated Protein Expression in Human Precancerous Colorectal Neoplasms: A Quantitative Proteomics Study
Uzozie, Anuli, Nanni, Paolo, Staiano, Teresa, Grossmann, Jonas, Barkow-Oesterreicher, Simon, Shay, Jerry W., Tiwari, Amit, Buffoli, Federico, Laczko, Endre, Marra, Giancarlo
Published in Molecular & cellular proteomics (01.05.2014)
Published in Molecular & cellular proteomics (01.05.2014)
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Journal Article
Optimization of LTQ-Orbitrap mass spectrometer parameters for the identification of ADP-ribosylation sites
Rosenthal, Florian, Nanni, Paolo, Barkow-Oesterreicher, Simon, Hottiger, Michael O
Year of Publication 04.09.2015
Year of Publication 04.09.2015
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Journal Article
The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions
Vazquez-Gutierrez, Pamela, Stevens, Marc J A, Gehrig, Peter, Barkow-Oesterreicher, Simon, Lacroix, Christophe, Chassard, Christophe
Year of Publication 06.01.2017
Year of Publication 06.01.2017
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Journal Article
The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions
Vazquez-Gutierrez, Pamela, Stevens, Marc J.A, Gehrig, Peter, Barkow-Oesterreicher, Simon, Lacroix, Christophe, Chassard, Christophe
Published in BMC Genomics (01.01.2017)
Published in BMC Genomics (01.01.2017)
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Journal Article
Quantitative shotgun proteomics reveals early markers of colorectal carcinogenesis (591.1)
Uzozie, Anuli, Nanni, Paolo, Staiano, Teresa, Grossmann, Jonas, Barkow‐Oesterreicher, Simon, Shay, Jerry, Tiwari, Amit, Buffoli, Federico, Laczko, Endre, Marra, Giancarlo
Published in The FASEB journal (01.04.2014)
Published in The FASEB journal (01.04.2014)
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Journal Article
Sorbitol dehydrogenase overexpression and other aspects of dysregulated protein expression in human precancerous colorectal neoplasms: a quantitative proteomics study
Uzozie, Anuli, Nanni, Paolo, Staiano, Teresa, Grossmann, Jonas, Barkow-Oesterreicher, Simon, Shay, Jerry W, Tiwari, Amit, Buffoli, Federico, Laczko, Endre, Marra, Giancarlo
Year of Publication 2014
Year of Publication 2014
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Journal Article
FCC – An automated rule-based processing tool for life science data
Barkow-Oesterreicher, Simon, Türker, Can, Panse, Christian
Published in Source code for biology and medicine (11.01.2013)
Published in Source code for biology and medicine (11.01.2013)
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Journal Article