A RESTful API for Accessing Microbial Community Data for MG-RAST
Wilke, Andreas, Bischof, Jared, Harrison, Travis, Brettin, Tom, D'Souza, Mark, Gerlach, Wolfgang, Matthews, Hunter, Paczian, Tobias, Wilkening, Jared, Glass, Elizabeth M, Desai, Narayan, Meyer, Folker
Published in PLOS computational biology/PLoS computational biology (01.01.2015)
Published in PLOS computational biology/PLoS computational biology (01.01.2015)
Get full text
Journal Article
Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella
Foster, Jeffrey T, Beckstrom-Sternberg, Stephen M, Pearson, Talima, Beckstrom-Sternberg, James S, Chain, Patrick S G, Roberto, Francisco F, Hnath, Jonathan, Brettin, Tom, Keim, Paul
Published in Journal of Bacteriology (01.04.2009)
Published in Journal of Bacteriology (01.04.2009)
Get full text
Journal Article
Genome of Methylobacillus flagellatus, Molecular Basis for Obligate Methylotrophy, and Polyphyletic Origin of Methylotrophy
CHISTOSERDOVA, Ludmila, LAPIDUS, Alla, LIDSTROM, Mary E, HAN, Cliff, GOODWIN, Lynne, SAUNDERS, Liz, BRETTIN, Tom, TAPIA, Roxanne, GILNA, Paul, LUCAS, Susan, RICHARDSON, Paul M
Published in Journal of Bacteriology (01.06.2007)
Published in Journal of Bacteriology (01.06.2007)
Get full text
Journal Article
Pandemic drugs at pandemic speed: infrastructure for accelerating COVID-19 drug discovery with hybrid machine learning- and physics-based simulations on high-performance computers
Tan, Li, Di Meglio, Alberto, Brettin, Tom, Titov, Mikhail, Succi, Sauro, Highfield, Roger R, Vallecorsa, Sofia, Turilli, Matteo, Alfè, Dario, Bode, Mathis, Mathias, Gerald, Bhati, Agastya P, Wifling, David, Stevens, Rick, Jha, Shantenu, Coveney, Peter V, Merzky, Andre, Wan, Shunzhou, Clyde, Austin R, Scafuri, Nicola, Ma, Heng, Rocchia, Walter, Trifan, Anda, Donon, Yann, Kranzlmüller, Dieter, Xia, Fangfang, Partin, Alexander, Duan, Xiaotan, Ramanathan, Arvind
Published in Interface Focus (12.10.2021)
Published in Interface Focus (12.10.2021)
Get full text
Paper
Journal Article
Towards a modular architecture for science factories
Vescovi, Rafael, Ginsburg, Tobias, Hippe, Kyle, Ozgulbas, Doga, Stone, Casey, Stroka, Abraham, Butler, Rory, Blaiszik, Ben, Brettin, Tom, Chard, Kyle, Hereld, Mark, Ramanathan, Arvind, Stevens, Rick, Vriza, Aikaterini, Xu, Jie, Zhang, Qingteng, Foster, Ian
Published in Digital discovery (04.12.2023)
Published in Digital discovery (04.12.2023)
Get full text
Journal Article
Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks
Makarova, Kira S, Omelchenko, Marina V, Gaidamakova, Elena K, Matrosova, Vera Y, Vasilenko, Alexander, Zhai, Min, Lapidus, Alla, Copeland, Alex, Kim, Edwin, Land, Miriam, Mavrommatis, Konstantinos, Pitluck, Samuel, Richardson, Paul M, Detter, Chris, Brettin, Thomas, Saunders, Elizabeth, Lai, Barry, Ravel, Bruce, Kemner, Kenneth M, Wolf, Yuri I, Sorokin, Alexander, Gerasimova, Anna V, Gelfand, Mikhail S, Fredrickson, James K, Koonin, Eugene V, Daly, Michael J
Published in PLoS ONE (26.09.2007)
Published in PLoS ONE (26.09.2007)
Get full text
Journal Article
Genomics of an extreme psychrophile, Psychromonas ingrahamii
Riley, Monica, Staley, James T, Danchin, Antoine, Wang, Ting Zhang, Brettin, Thomas S, Hauser, Loren J, Land, Miriam L, Thompson, Linda S
Published in BMC genomics (06.05.2008)
Published in BMC genomics (06.05.2008)
Get full text
Journal Article
A RESTful API for Accessing Microbial Community Data for MG-RAST: e1004008
Wilke, Andreas, Bischof, Jared, Harrison, Travis, Brettin, Tom, Gerlach, Wolfgang, Matthews, Hunter, Paczian, Tobias, Wilkening, Jared, Glass, Elizabeth M, Desai, Narayan, Meyer, Folker
Published in PLoS computational biology (01.01.2015)
Published in PLoS computational biology (01.01.2015)
Get full text
Journal Article
Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b
VISHNIVETSKAYA, Tatiana A, LUCAS, Susan, SAUNDERS, E, BRETTIN, Tom, DETTER, Chris, HAN, Cliff, LARIMER, Frank, LAND, Miriam L, HAUSER, Loren J, KYRPIDES, Nikos C, OVCHINNIKOVA, Galina, KATHARIOU, Sophia, COPELAND, Alex, RAMALEY, Robert F, RODRIGUES, Debora F, HENDRIX, Christie, RICHARDSON, Paul, TIEDJE, James M, LAPIDUS, Alia, GLAVINA DEL RIO, Tijana, DALIN, E, TICE, Hope, BRUCE, David C, GOODWIN, Lynne A, PITLUCK, Sam
Published in Journal of Bacteriology (01.06.2011)
Published in Journal of Bacteriology (01.06.2011)
Get full text
Journal Article
Scalable reinforcement-learning-based neural architecture search for cancer deep learning research
Balaprakash, Prasanna, Egele, Romain, Salim, Misha, Wild, Stefan, Vishwanath, Venkatram, Xia, Fangfang, Brettin, Tom, Stevens, Rick
Published in Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (17.11.2019)
Published in Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (17.11.2019)
Get more information
Conference Proceeding
Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds
Hwang, Chiachi, Copeland, Alex, Lucas, Susan, Lapidus, Alla, Barry, Kerrie, Detter, John C, Glavina del Rio, Tijana, Hammon, Nancy, Israni, Sanjay, Dalin, Eileen, Tice, Hope, Pitluck, S, Chertkov, Olga, Brettin, Tom, Bruce, David, Han, C, Schmutz, Jeremy, Larimer, F, Land, M. L, Hauser, Loren, Kyrpides, Nikos, Mikhailova, Natalia, Ye, Qi, Zhou, Jizhong, Richardson, Paul, Fields, Matthew W
Year of Publication 01.11.2016
Get full text
Year of Publication 01.11.2016
Journal Article
Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylellaspecies and in heterocystous cyanobacteria
Xie, Gary, Bonner, Carol A, Brettin, Tom, Gottardo, Raphael, Keyhani, Nemat O, Jensen, Roy A
Published in Genome Biology (Online Edition) (29.01.2003)
Published in Genome Biology (Online Edition) (29.01.2003)
Get full text
Journal Article
The genome of Methylobacillus flagellatus, the molecular basis forobligate methylotrophy, and the polyphyletic origin ofmethylotrophy
Chistoserdova, Ludmila, Lapidus, Alla, Han, Cliff, Goodwin,Lynne, Saunders, Liz, Brettin, Tom, Tapia, Roxanne, Gilna, Paul, Lucas,Susan, Richardson, Paul M., Lidstrom, Mary E.
Published in Journal of bacteriology (08.01.2007)
Published in Journal of bacteriology (08.01.2007)
Get full text
Journal Article
Towards a Modular Architecture for Science Factories
Vescovi, Rafael, Ginsburg, Tobias, Hippe, Kyle, Ozgulbas, Doga, Stone, Casey, Stroka, Abraham, Butler, Rory, Blaiszik, Ben, Brettin, Tom, Chard, Kyle, Hereld, Mark, Ramanathan, Arvind, Stevens, Rick, Vriza, Aikaterini, Xu, Jie, Zhang, Qingteng, Foster, Ian
Published in arXiv (Cornell University) (18.08.2023)
Published in arXiv (Cornell University) (18.08.2023)
Get full text
Journal Article
Scalable Reinforcement-Learning-Based Neural Architecture Search for Cancer Deep Learning Research
Balaprakash, Prasanna, Egele, Romain, Salim, Misha, Wild, Stefan, Vishwanath, Venkatram, Xia, Fangfang, Brettin, Tom, Stevens, Rick
Published in arXiv.org (01.09.2019)
Published in arXiv.org (01.09.2019)
Get full text
Paper
Journal Article
A systematic approach to featurization for cancer drug sensitivity predictions with deep learning
Clyde, Austin, Brettin, Tom, Partin, Alexander, Shaulik, Maulik, Yoo, Hyunseung, Evrard, Yvonne, Zhu, Yitan, Xia, Fangfang, Stevens, Rick
Published in arXiv (Cornell University) (30.04.2020)
Published in arXiv (Cornell University) (30.04.2020)
Get full text
Journal Article
Fungal genome sequencing and bioenergy
Baker, Scott E., Thykaer, Jette, Adney, William S., Brettin, Thomas S., Brockman, Fred J., D'haeseleer, Patrik, Martinez, A. Diego, Miller, R. Michael, Rokhsar, Daniel S., Schadt, Christopher W., Torok, Tamas, Tuskan, Gerald, Bennett, Joan, Berka, Randy M., Briggs, Steven P., Heitman, Joseph, Taylor, John, Gillian Turgeon, B., Werner-Washburne, Margaret, Himmel, Michael E.
Published in Fungal biology reviews (01.02.2008)
Published in Fungal biology reviews (01.02.2008)
Get full text
Journal Article
Pandemic Drugs at Pandemic Speed: Infrastructure for Accelerating COVID-19 Drug Discovery with Hybrid Machine Learning- and Physics-based Simulations on High Performance Computers
Bhati, Agastya P, Wan, Shunzhou, Alfè, Dario, Clyde, Austin R, Bode, Mathis, Tan, Li, Titov, Mikhail, Merzky, Andre, Turilli, Matteo, Jha, Shantenu, Highfield, Roger R, Rocchia, Walter, Scafuri, Nicola, Succi, Sauro, Kranzlmüller, Dieter, Mathias, Gerald, Wifling, David, Donon, Yann, Alberto Di Meglio, Vallecorsa, Sofia, Ma, Heng, Trifan, Anda, Ramanathan, Arvind, Brettin, Tom, Partin, Alexander, Xia, Fangfang, Duan, Xiaotan, Stevens, Rick, Coveney, Peter V
Published in arXiv.org (04.09.2021)
Published in arXiv.org (04.09.2021)
Get full text
Paper
Journal Article
Targeting SARS-CoV-2 with AI- and HPC-enabled Lead Generation: A First Data Release
Babuji, Yadu, Blaiszik, Ben, Brettin, Tom, Chard, Kyle, Chard, Ryan, Clyde, Austin, Foster, Ian, Hong, Zhi, Jha, Shantenu, Li, Zhuozhao, Liu, Xuefeng, Ramanathan, Arvind, Ren, Yi, Saint, Nicholaus, Schwarting, Marcus, Stevens, Rick, van Dam, Hubertus, Wagner, Rick
Published in arXiv (Cornell University) (27.05.2020)
Published in arXiv (Cornell University) (27.05.2020)
Get full text
Journal Article