Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping
Gautier, Mathieu, Foucaud, Julien, Gharbi, Karim, Cézard, Timothée, Galan, Maxime, Loiseau, Anne, Thomson, Marian, Pudlo, Pierre, Kerdelhué, Carole, Estoup, Arnaud
Published in Molecular ecology (01.07.2013)
Published in Molecular ecology (01.07.2013)
Get full text
Journal Article
Special features of RAD Sequencing data: implications for genotyping
Davey, John W., Cezard, Timothée, Fuentes-Utrilla, Pablo, Eland, Cathlene, Gharbi, Karim, Blaxter, Mark L.
Published in Molecular ecology (01.06.2013)
Published in Molecular ecology (01.06.2013)
Get full text
Journal Article
Identification and characterization of Hoxa9 binding sites in hematopoietic cells
Huang, Yongsheng, Sitwala, Kajal, Bronstein, Joel, Sanders, Daniel, Dandekar, Monisha, Collins, Cailin, Robertson, Gordon, MacDonald, James, Cezard, Timothee, Bilenky, Misha, Thiessen, Nina, Zhao, Yongjun, Zeng, Thomas, Hirst, Martin, Hero, Alfred, Jones, Steven, Hess, Jay L.
Published in Blood (12.01.2012)
Published in Blood (12.01.2012)
Get full text
Journal Article
A newly developed genetic sex marker and its application to understanding chemically induced feminisation in roach (Rutilus rutilus)
Lange, Anke, Paris, Josephine R., Gharbi, Karim, Cézard, Timothée, Miyagawa, Shinichi, Iguchi, Taisen, Studholme, David J., Tyler, Charles R.
Published in Molecular ecology resources (01.07.2020)
Published in Molecular ecology resources (01.07.2020)
Get full text
Journal Article
Mass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to the zebra finch genome
Bourgeois, Yann X. C., Lhuillier, Emeline, Cézard, Timothée, Bertrand, Joris A. M., Delahaie, Boris, Cornuault, Josselin, Duval, Thomas, Bouchez, Olivier, Milá, Borja, Thébaud, Christophe
Published in Molecular ecology resources (01.09.2013)
Published in Molecular ecology resources (01.09.2013)
Get full text
Journal Article
Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
Robertson, A Gordon, Bilenky, Mikhail, Tam, Angela, Zhao, Yongjun, Zeng, Thomas, Thiessen, Nina, Cezard, Timothee, Fejes, Anthony P, Wederell, Elizabeth D, Cullum, Rebecca, Euskirchen, Ghia, Krzywinski, Martin, Birol, Inanc, Snyder, Michael, Hoodless, Pamela A, Hirst, Martin, Marra, Marco A, Jones, Steven J M
Published in Genome Research (01.12.2008)
Published in Genome Research (01.12.2008)
Get full text
Journal Article
SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing
GERALDES, ARMANDO, PANG, JOHNSON, THIESSEN, NINA, CEZARD, TIMOTHEE, MOORE, RICHARD, ZHAO, YONGJUN, TAM, ANGELA, WANG, SHUCAI, FRIEDMANN, MICHAEL, BIROL, INANC, JONES, STEVEN J.M, CRONK, QUENTIN C.B, DOUGLAS, CARL J
Published in Molecular ecology resources (01.03.2011)
Published in Molecular ecology resources (01.03.2011)
Get full text
Journal Article
Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver
Hoffman, Brad G, Robertson, Gordon, Zavaglia, Bogard, Beach, Mike, Cullum, Rebecca, Lee, Sam, Soukhatcheva, Galina, Li, Leping, Wederell, Elizabeth D, Thiessen, Nina, Bilenky, Mikhail, Cezard, Timothee, Tam, Angela, Kamoh, Baljit, Birol, Inanc, Dai, Derek, Zhao, Yongjun, Hirst, Martin, Verchere, C Bruce, Helgason, Cheryl D, Marra, Marco A, Jones, Steven J M, Hoodless, Pamela A
Published in Genome research (01.08.2010)
Published in Genome research (01.08.2010)
Get full text
Journal Article
Quantitative genome re-sequencing defines multiple mutations conferring chloroquine resistance in rodent malaria
Kinga Modrzynska, Katarzyna, Creasey, Alison, Loewe, Laurence, Cezard, Timothee, Trindade Borges, Sofia, Martinelli, Axel, Rodrigues, Louise, Cravo, Pedro, Blaxter, Mark, Carter, Richard, Hunt, Paul
Published in BMC genomics (21.03.2012)
Published in BMC genomics (21.03.2012)
Get full text
Journal Article
Quality control of next-generation sequencing data without a reference
Trivedi, Urmi H, Cézard, Timothée, Bridgett, Stephen, Montazam, Anna, Nichols, Jenna, Blaxter, Mark, Gharbi, Karim
Published in Frontiers in genetics (06.05.2014)
Published in Frontiers in genetics (06.05.2014)
Get full text
Journal Article
Transcriptome profiling during a natural host-parasite interaction
McTaggart, Seanna J, Cézard, Timothée, Garbutt, Jennie S, Wilson, Phil J, Little, Tom J
Published in BMC genomics (28.08.2015)
Published in BMC genomics (28.08.2015)
Get full text
Journal Article
Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild
Pascoal, Sonia, Risse, Judith E., Zhang, Xiao, Blaxter, Mark, Cezard, Timothee, Challis, Richard J., Gharbi, Karim, Hunt, John, Kumar, Sujai, Langan, Emma, Liu, Xuan, Rayner, Jack G., Ritchie, Michael G., Snoek, Basten L., Trivedi, Urmi, Bailey, Nathan W.
Published in Evolution letters (01.02.2020)
Published in Evolution letters (01.02.2020)
Get full text
Journal Article
Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR [version 2; peer review: 2 approved]
Beier, Sebastian, Fiebig, Anne, Pommier, Cyril, Liyanage, Isuru, Lange, Matthias, Kersey, Paul J., Weise, Stephan, Finkers, Richard, Koylass, Baron, Cezard, Timothee, Courtot, Mélanie, Contreras-Moreira, Bruno, Naamati, Guy, Dyer, Sarah, Scholz, Uwe
Published in F1000 research (2022)
Published in F1000 research (2022)
Get full text
Journal Article
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses
Rahman, Nadim, O'Cathail, Colman, Zyoud, Ahmad, Sokolov, Alexey, Oude Munnink, Bas, Grüning, Björn, Cummins, Carla, Amid, Clara, Nieuwenhuijse, David F, Visontai, Dávid, Yuan, David Yu, Gupta, Dipayan, Prasad, Divyae K, Gulyás, Gábor Máté, Rinck, Gabriele, McKinnon, Jasmine, Rajan, Jeena, Knaggs, Jeff, Skiby, Jeffrey Edward, Stéger, József, Szarvas, Judit, Gueye, Khadim, Papp, Krisztián, Hoek, Maarten, Kumar, Manish, Ventouratou, Marianna A, Bouquieaux, Marie-Catherine, Koliba, Martin, Mansurova, Milena, Haseeb, Muhammad, Worp, Nathalie, Harrison, Peter W, Leinonen, Rasko, Thorne, Ross, Selvakumar, Sandeep, Hunt, Sarah, Venkataraman, Sundar, Jayathilaka, Suran, Cezard, Timothée, Maier, Wolfgang, Waheed, Zahra, Iqbal, Zamin, Aarestrup, Frank Møller, Csabai, Istvan, Koopmans, Marion, Burdett, Tony, Cochrane, Guy
Published in Microbial genomics (01.02.2024)
Published in Microbial genomics (01.02.2024)
Get full text
Journal Article
Recommendations for the formatting of Variant Call Format (VCF) files to make plant genotyping data FAIR [version 1; peer review: 2 approved with reservations]
Beier, Sebastian, Fiebig, Anne, Pommier, Cyril, Liyanage, Isuru, Lange, Matthias, Kersey, Paul J, Weise, Stephan, Finkers, Richard, Koylass, Baron, Cezard, Timothee, Courtot, Mélanie, Contreras-Moreira, Bruno, Naamati, Guy, Dyer, Sarah, Scholz, Uwe
Published in F1000 research (2022)
Published in F1000 research (2022)
Get full text
Journal Article
System-Level Analysis of Neuroblastoma Tumor―Initiating Cells Implicates AURKB as a Novel Drug Target for Neuroblastoma
MOROZOVA, Olena, VOJVODIC, Milijana, SMITH, Kristen M, MILLER, Freda, TAYLOR, Paul, THIESSEN, Nina, VARHOL, Richard, YONGJUN ZHAO, JONES, Steven, MOFFAT, Jason, KISLINGER, Thomas, MORAN, Michael F, GRINSHTEIN, Natalie, KAPLAN, David R, MARRA, Marco A, HANSFORD, Loen M, BLAKELY, Kim M, MASLOVA, Alexandra, HIRST, Martin, CEZARD, Timothee, MORIN, Ryan D, MOORE, Richard
Published in Clinical cancer research (15.09.2010)
Published in Clinical cancer research (15.09.2010)
Get full text
Journal Article
Special features of RAD Sequencing data: implications for genotyping: GENOTYPING BY SEQUENCING IN ECOLOGICAL AND CONSERVATION GENOMICS
DAVEY, John W, CEZARD, Timothée, FUENTES-UTRILLA, Pablo, ELAND, Cathlene, GHARBI, Karim, BLAXTER, Mark L
Published in Molecular ecology (2013)
Get full text
Published in Molecular ecology (2013)
Journal Article
Rapid Convergent Evolution in Wild Crickets
Pascoal, Sonia, Cezard, Timothee, Eik-Nes, Aasta, Gharbi, Karim, Majewska, Jagoda, Payne, Elizabeth, Ritchie, Michael G., Zuk, Marlene, Bailey, Nathan W.
Published in Current biology (01.06.2014)
Published in Current biology (01.06.2014)
Get full text
Journal Article
The effect of RAD allele dropout on the estimation of genetic variation within and between populations
Gautier, Mathieu, Gharbi, Karim, Cezard, Timothee, Foucaud, Julien, Kerdelhué, Carole, Pudlo, Pierre, Cornuet, Jean-Marie, Estoup, Arnaud
Published in Molecular ecology (01.06.2013)
Published in Molecular ecology (01.06.2013)
Get full text
Journal Article