Draft sequencing and assembly of the genome of the world's largest fish, the whale shark: Rhincodon typus Smith 1828
Read, Timothy D, Petit, 3rd, Robert A, Joseph, Sandeep J, Alam, Md Tauqeer, Weil, M Ryan, Ahmad, Maida, Bhimani, Ravila, Vuong, Jocelyn S, Haase, Chad P, Webb, D Harry, Tan, Milton, Dove, Alistair D M
Published in BMC genomics (14.07.2017)
Published in BMC genomics (14.07.2017)
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Journal Article
Population genomics of Chlamydia trachomatis: insights on drift, selection, recombination, and population structure
Joseph, Sandeep J, Didelot, Xavier, Rothschild, James, de Vries, Henry J C, Morré, Servaas A, Read, Timothy D, Dean, Deborah
Published in Molecular biology and evolution (01.12.2012)
Published in Molecular biology and evolution (01.12.2012)
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Journal Article
Dissecting Vancomycin-Intermediate Resistance in Staphylococcus aureus Using Genome-Wide Association
Alam, Md Tauqeer, Petit, Robert A., Crispell, Emily K., Thornton, Timothy A., Conneely, Karen N., Jiang, Yunxuan, Satola, Sarah W., Read, Timothy D.
Published in Genome biology and evolution (30.04.2014)
Published in Genome biology and evolution (30.04.2014)
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Journal Article
Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation
Rasko, David A, Worsham, Patricia L, Abshire, Terry G, Stanley, Scott T, Bannan, Jason D, Wilson, Mark R, Langham, Richard J, Decker, R. Scott, Jiang, Lingxia, Read, Timothy D, Phillippy, Adam M, Salzberg, Steven L, Pop, Mihai, Van Ert, Matthew N, Kenefic, Leo J, Keim, Paul S, Fraser-Liggett, Claire M, Ravel, Jacques
Published in Proceedings of the National Academy of Sciences - PNAS (22.03.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (22.03.2011)
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Journal Article
Functional genomic characterization of virulence factors from necrotizing fasciitis-causing strains of Aeromonas hydrophila
Grim, Christopher J, Kozlova, Elena V, Ponnusamy, Duraisamy, Fitts, Eric C, Sha, Jian, Kirtley, Michelle L, van Lier, Christina J, Tiner, Bethany L, Erova, Tatiana E, Joseph, Sandeep J, Read, Timothy D, Shak, Joshua R, Joseph, Sam W, Singletary, Ed, Felland, Tracy, Baze, Wallace B, Horneman, Amy J, Chopra, Ashok K
Published in Applied and Environmental Microbiology (01.07.2014)
Published in Applied and Environmental Microbiology (01.07.2014)
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Journal Article
USA300 Staphylococcus aureus persists on multiple body sites following an infection
Read, Timothy D, Petit, 3rd, Robert A, Yin, Zachary, Montgomery, Tuyaa, McNulty, Moira C, David, Michael Z
Published in BMC microbiology (05.12.2018)
Published in BMC microbiology (05.12.2018)
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Journal Article
Species-Wide Phylogenomics of the Staphylococcus aureus Agr Operon Revealed Convergent Evolution of Frameshift Mutations
Raghuram, Vishnu, Alexander, Ashley M, Loo, Hui Qi, Petit, 3rd, Robert A, Goldberg, Joanna B, Read, Timothy D
Published in Microbiology spectrum (23.02.2022)
Published in Microbiology spectrum (23.02.2022)
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Journal Article
Stability of the vaginal, oral, and gut microbiota across pregnancy among African American women: the effect of socioeconomic status and antibiotic exposure
Dunlop, Anne L, Knight, Anna K, Satten, Glen A, Cutler, Anya J, Wright, Michelle L, Mitchell, Rebecca M, Read, Timothy D, Mulle, Jennifer, Hertzberg, Vicki S, Hill, Cherie C, Smith, Alicia K, Corwin, Elizabeth J
Published in PeerJ (San Francisco, CA) (21.11.2019)
Published in PeerJ (San Francisco, CA) (21.11.2019)
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Journal Article
Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome
Raghuram, Vishnu, Petit, 3rd, Robert A, Karol, Zach, Mehta, Rohan, Weissman, Daniel B, Read, Timothy D
Published in mSystems (23.07.2024)
Published in mSystems (23.07.2024)
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Journal Article
Development of an Amplicon Nanopore Sequencing Strategy for Detection of Mutations Conferring Intermediate Resistance to Vancomycin in Staphylococcus aureus Strains
Moller, Abraham G, Petit, 3rd, Robert A, Davis, Michelle H, Read, Timothy D
Published in Microbiology spectrum (14.02.2023)
Published in Microbiology spectrum (14.02.2023)
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Journal Article
Genomic insights into the evolution of secondary metabolism of Escovopsis and its allies, specialized fungal symbionts of fungus-farming ants
Berasategui, Aileen, Salem, Hassan, Moller, Abraham G, Christopher, Yuliana, Vidaurre Montoya, Quimi, Conn, Caitlin, Read, Timothy D, Rodrigues, Andre, Ziemert, Nadine, Gerardo, Nicole
Published in mSystems (23.07.2024)
Published in mSystems (23.07.2024)
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Journal Article
Dynamics of genome change among Legionella species
Joseph, Sandeep J., Cox, Daniel, Wolff, Bernard, Morrison, Shatavia S., Kozak-Muiznieks, Natalia A., Frace, Michael, Didelot, Xavier, Castillo-Ramirez, Santiago, Winchell, Jonas, Read, Timothy D., Dean, Deborah
Published in Scientific reports (16.09.2016)
Published in Scientific reports (16.09.2016)
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Journal Article
Genomic analysis of variability in Delta-toxin levels between Staphylococcus aureus strains
Su, Michelle, Lyles, James T, Petit Iii, Robert A, Peterson, Jessica, Hargita, Michelle, Tang, Huaqiao, Solis-Lemus, Claudia, Quave, Cassandra L, Read, Timothy D
Published in PeerJ (San Francisco, CA) (24.03.2020)
Published in PeerJ (San Francisco, CA) (24.03.2020)
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Journal Article
Phylogenetic Discovery Bias in Bacillus anthracis Using Single-Nucleotide Polymorphisms from Whole-Genome Sequencing
Pearson, Talima, Busch, Joseph D., Ravel, Jacques, Read, Timothy D., Rhoton, Shane D., Jana M. U'Ren, Simonson, Tatum S., Kachur, Sergey M., Leadem, Rebecca R., Cardon, Michelle L., Van Ert, Matthew N., Huynh, Lynn Y., Fraser, Claire M., Keim, Paul, Falkow, Stanley
Published in Proceedings of the National Academy of Sciences - PNAS (14.09.2004)
Published in Proceedings of the National Academy of Sciences - PNAS (14.09.2004)
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Journal Article