Deep Learning-Based Multi-Omics Integration Robustly Predicts Survival in Liver Cancer
Chaudhary, Kumardeep, Poirion, Olivier B, Lu, Liangqun, Garmire, Lana X
Published in Clinical cancer research (15.03.2018)
Published in Clinical cancer research (15.03.2018)
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Journal Article
DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data
Arisdakessian, Cédric, Poirion, Olivier, Yunits, Breck, Zhu, Xun, Garmire, Lana X
Published in Genome Biology (18.10.2019)
Published in Genome Biology (18.10.2019)
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Journal Article
Deep Learning Accurately Predicts Estrogen Receptor Status in Breast Cancer Metabolomics Data
Alakwaa, Fadhl M, Chaudhary, Kumardeep, Garmire, Lana X
Published in Journal of proteome research (05.01.2018)
Published in Journal of proteome research (05.01.2018)
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Journal Article
Single cell transcriptome research in human placenta
Li, Hui, Huang, Qianhui, Liu, Yu, Garmire, Lana X
Published in Reproduction (Cambridge, England) (01.12.2020)
Published in Reproduction (Cambridge, England) (01.12.2020)
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Journal Article
Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data
Huang, Qianhui, Liu, Yu, Du, Yuheng, Garmire, Lana X.
Published in Genomics, proteomics & bioinformatics (01.04.2021)
Published in Genomics, proteomics & bioinformatics (01.04.2021)
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Journal Article
Regulated Accumulation of Desmosterol Integrates Macrophage Lipid Metabolism and Inflammatory Responses
Spann, Nathanael J., Garmire, Lana X., McDonald, Jeffrey G., Myers, David S., Milne, Stephen B., Shibata, Norihito, Reichart, Donna, Fox, Jesse N., Shaked, Iftach, Heudobler, Daniel, Raetz, Christian R.H., Wang, Elaine W., Kelly, Samuel L., Sullards, M. Cameron, Murphy, Robert C., Merrill, Alfred H., Brown, H. Alex, Dennis, Edward A., Li, Andrew C., Ley, Klaus, Tsimikas, Sotirios, Fahy, Eoin, Subramaniam, Shankar, Quehenberger, Oswald, Russell, David W., Glass, Christopher K.
Published in Cell (28.09.2012)
Published in Cell (28.09.2012)
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Journal Article
Enter the Matrix: Factorization Uncovers Knowledge from Omics
Stein-O’Brien, Genevieve L., Arora, Raman, Culhane, Aedin C., Favorov, Alexander V., Garmire, Lana X., Greene, Casey S., Goff, Loyal A., Li, Yifeng, Ngom, Aloune, Ochs, Michael F., Xu, Yanxun, Fertig, Elana J.
Published in Trends in genetics (01.10.2018)
Published in Trends in genetics (01.10.2018)
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Journal Article
Evaluation of STAR and Kallisto on Single Cell RNA-Seq Data Alignment
Du, Yuheng, Huang, Qianhui, Arisdakessian, Cedric, Garmire, Lana X
Published in G3 : genes - genomes - genetics (01.05.2020)
Published in G3 : genes - genomes - genetics (01.05.2020)
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Journal Article
ASGARD is A Single-cell Guided Pipeline to Aid Repurposing of Drugs
He, Bing, Xiao, Yao, Liang, Haodong, Huang, Qianhui, Du, Yuheng, Li, Yijun, Garmire, David, Sun, Duxin, Garmire, Lana X.
Published in Nature communications (22.02.2023)
Published in Nature communications (22.02.2023)
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Journal Article
Cox-nnet v2.0: improved neural-network-based survival prediction extended to large-scale EMR data
Wang, Di, Jing, Zheng, He, Kevin, Garmire, Lana X.
Published in Bioinformatics (Oxford, England) (09.09.2021)
Published in Bioinformatics (Oxford, England) (09.09.2021)
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Journal Article
BML: a versatile web server for bipartite motif discovery
Vahed, Mohammad, Vahed, Majid, Garmire, Lana X
Published in Briefings in bioinformatics (17.01.2022)
Published in Briefings in bioinformatics (17.01.2022)
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Journal Article
Th17 cells transdifferentiate into regulatory T cells during resolution of inflammation
Gagliani, Nicola, Vesely, Maria Carolina Amezcua, Iseppon, Andrea, Brockmann, Leonie, Xu, Hao, Palm, Noah W., de Zoete, Marcel R., Licona-Limón, Paula, Paiva, Ricardo S., Ching, Travers, Weaver, Casey, Zi, Xiaoyuan, Pan, Xinghua, Fan, Rong, Garmire, Lana X., Cotton, Matthew J., Drier, Yotam, Bernstein, Bradley, Geginat, Jens, Stockinger, Brigitta, Esplugues, Enric, Huber, Samuel, Flavell, Richard A.
Published in Nature (London) (09.07.2015)
Published in Nature (London) (09.07.2015)
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