Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons
Wapinski, Orly L., Vierbuchen, Thomas, Qu, Kun, Lee, Qian Yi, Chanda, Soham, Fuentes, Daniel R., Giresi, Paul G., Ng, Yi Han, Marro, Samuele, Neff, Norma F., Drechsel, Daniela, Martynoga, Ben, Castro, Diogo S., Webb, Ashley E., Südhof, Thomas C., Brunet, Anne, Guillemot, Francois, Chang, Howard Y., Wernig, Marius
Published in Cell (24.10.2013)
Published in Cell (24.10.2013)
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Journal Article
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Buenrostro, Jason D, Giresi, Paul G, Zaba, Lisa C, Chang, Howard Y, Greenleaf, William J
Published in Nature methods (01.12.2013)
Published in Nature methods (01.12.2013)
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Journal Article
Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
Satpathy, Ansuman T., Granja, Jeffrey M., Yost, Kathryn E., Qi, Yanyan, Meschi, Francesca, McDermott, Geoffrey P., Olsen, Brett N., Mumbach, Maxwell R., Pierce, Sarah E., Corces, M. Ryan, Shah, Preyas, Bell, Jason C., Jhutty, Darisha, Nemec, Corey M., Wang, Jean, Wang, Li, Yin, Yifeng, Giresi, Paul G., Chang, Anne Lynn S., Zheng, Grace X. Y., Greenleaf, William J., Chang, Howard Y.
Published in Nature biotechnology (01.08.2019)
Published in Nature biotechnology (01.08.2019)
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Journal Article
Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA
Simon, Jeremy M, Giresi, Paul G, Davis, Ian J, Lieb, Jason D
Published in Nature protocols (01.02.2012)
Published in Nature protocols (01.02.2012)
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Journal Article
A novel ATAC-seq approach reveals lineage-specific reinforcement of the open chromatin landscape via cooperation between BAF and p63
Bao, Xiaomin, Rubin, Adam J, Qu, Kun, Zhang, Jiajing, Giresi, Paul G, Chang, Howard Y, Khavari, Paul A
Published in Genome Biology (18.12.2015)
Published in Genome Biology (18.12.2015)
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Journal Article
Chromatin Accessibility Landscape of Cutaneous T Cell Lymphoma and Dynamic Response to HDAC Inhibitors
Qu, Kun, Zaba, Lisa C., Satpathy, Ansuman T., Giresi, Paul G., Li, Rui, Jin, Yonghao, Armstrong, Randall, Jin, Chen, Schmitt, Nathalie, Rahbar, Ziba, Ueno, Hideki, Greenleaf, William J., Kim, Youn H., Chang, Howard Y.
Published in Cancer cell (10.07.2017)
Published in Cancer cell (10.07.2017)
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Journal Article
A map of open chromatin in human pancreatic islets
Mohlke, Karen L, Lieb, Jason D, Ferrer, Jorge, Gaulton, Kyle J, Nammo, Takao, Pasquali, Lorenzo, Simon, Jeremy M, Giresi, Paul G, Fogarty, Marie P, Panhuis, Tami M, Mieczkowski, Piotr, Secchi, Antonio, Bosco, Domenico, Berney, Thierry, Montanya, Eduard
Published in Nature genetics (01.03.2010)
Published in Nature genetics (01.03.2010)
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Journal Article
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
Song, Lingyun, Zhang, Zhancheng, Grasfeder, Linda L, Boyle, Alan P, Giresi, Paul G, Lee, Bum-Kyu, Sheffield, Nathan C, Gräf, Stefan, Huss, Mikael, Keefe, Damian, Liu, Zheng, London, Darin, McDaniell, Ryan M, Shibata, Yoichiro, Showers, Kimberly A, Simon, Jeremy M, Vales, Teresa, Wang, Tianyuan, Winter, Deborah, Zhang, Zhuzhu, Clarke, Neil D, Birney, Ewan, Iyer, Vishwanath R, Crawford, Gregory E, Lieb, Jason D, Furey, Terrence S
Published in Genome research (01.10.2011)
Published in Genome research (01.10.2011)
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Journal Article
Individuality and Variation of Personal Regulomes in Primary Human T Cells
Qu, Kun, Zaba, Lisa C., Giresi, Paul G., Li, Rui, Longmire, Michelle, Kim, Youn H., Greenleaf, William J., Chang, Howard Y.
Published in Cell systems (29.07.2015)
Published in Cell systems (29.07.2015)
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Journal Article
Challenges and recommendations for epigenomics in precision health
Carter, Ava C, Chang, Howard Y, Church, George, Dombkowski, Ashley, Ecker, Joseph R, Gil, Elad, Giresi, Paul G, Greely, Henry, Greenleaf, William J, Hacohen, Nir, He, Chuan, Hill, David, Ko, Justin, Kohane, Isaac, Kundaje, Anshul, Palmer, Megan, Snyder, Michael P, Tung, Joyce, Urban, Alexander, Vidal, Marc, Wong, Wing
Published in Nature biotechnology (01.12.2017)
Published in Nature biotechnology (01.12.2017)
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Journal Article
STAT3 acts through pre-existing nucleosome-depleted regions bound by FOS during an epigenetic switch linking inflammation to cancer
Fleming, Joseph D, Giresi, Paul G, Lindahl-Allen, Marianne, Krall, Elsa B, Lieb, Jason D, Struhl, Kevin
Published in Epigenetics & chromatin (14.02.2015)
Published in Epigenetics & chromatin (14.02.2015)
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Journal Article
Global analysis of gene expression patterns during disuse atrophy in rat skeletal muscle
Stevenson, Eric J, Giresi, Paul G, Koncarevic, Alan, Kandarian, Susan C
Published in The Journal of physiology (15.08.2003)
Published in The Journal of physiology (15.08.2003)
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Journal Article
Repression of Stress-Induced LINE-1 Expression Protects Cancer Cell Subpopulations from Lethal Drug Exposure
Guler, Gulfem Dilek, Tindell, Charles Albert, Pitti, Robert, Wilson, Catherine, Nichols, Katrina, KaiWai Cheung, Tommy, Kim, Hyo-Jin, Wongchenko, Matthew, Yan, Yibing, Haley, Benjamin, Cuellar, Trinna, Webster, Joshua, Alag, Navneet, Hegde, Ganapati, Jackson, Erica, Nance, Tracy Leah, Giresi, Paul Garrett, Chen, Kuan-Bei, Liu, Jinfeng, Jhunjhunwala, Suchit, Settleman, Jeff, Stephan, Jean-Philippe, Arnott, David, Classon, Marie
Published in Cancer cell (14.08.2017)
Published in Cancer cell (14.08.2017)
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Journal Article
Identification of a molecular signature of sarcopenia
Giresi, Paul G, Stevenson, Eric J, Theilhaber, Joachim, Koncarevic, Alan, Parkington, Jascha, Fielding, Roger A, Kandarian, Susan C
Published in Physiological genomics (14.04.2005)
Published in Physiological genomics (14.04.2005)
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Journal Article
Identification of human CD4 + T cell populations with distinct antitumor activity
Nelson, Michelle H, Knochelmann, Hannah M, Bailey, Stefanie R, Huff, Logan W, Bowers, Jacob S, Majchrzak-Kuligowska, Kinga, Wyatt, Megan M, Rubinstein, Mark P, Mehrotra, Shikhar, Nishimura, Michael I, Armeson, Kent E, Giresi, Paul G, Zilliox, Michael J, Broxmeyer, Hal E, Paulos, Chrystal M
Published in Science advances (01.07.2020)
Published in Science advances (01.07.2020)
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