Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
t Hoen, Peter A.C, Ariyurek, Yavuz, Thygesen, Helene H, Vreugdenhil, Erno, Vossen, Rolf H.A.M, de Menezes, Renée X, Boer, Judith M, van Ommen, Gert-Jan B, den Dunnen, Johan T
Published in Nucleic acids research (01.12.2008)
Published in Nucleic acids research (01.12.2008)
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Journal Article
Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation
de Klerk, Eleonora, Venema, Andrea, Anvar, S Yahya, Goeman, Jelle J, Hu, Ouhua, Trollet, Capucine, Dickson, George, den Dunnen, Johan T, van der Maarel, Silvère M, Raz, Vered, 't Hoen, Peter A C
Published in Nucleic acids research (01.10.2012)
Published in Nucleic acids research (01.10.2012)
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Journal Article
Phage display screening without repetitious selection rounds
’t Hoen, Peter A.C., Jirka, Silvana M.G., ten Broeke, Bradley R., Schultes, Erik A., Aguilera, Begoña, Pang, Kar Him, Heemskerk, Hans, Aartsma-Rus, Annemieke, van Ommen, Gertjan J., den Dunnen, Johan T.
Published in Analytical biochemistry (15.02.2012)
Published in Analytical biochemistry (15.02.2012)
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Journal Article
Integrating Whole-Genome Sequencing in Clinical Genetics: A Novel Disruptive Structural Rearrangement Identified in the Dystrophin Gene ( DMD )
Gonçalves, Ana, Fortuna, Ana, Ariyurek, Yavuz, Oliveira, Márcia E, Nadais, Goreti, Pinheiro, Jorge, den Dunnen, Johan T, Sousa, Mário, Oliveira, Jorge, Santos, Rosário
Published in International journal of molecular sciences (01.01.2022)
Published in International journal of molecular sciences (01.01.2022)
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Journal Article
Detecting authorized and unauthorized genetically modified organisms containing vip3A by real-time PCR and next-generation sequencing
Liang, Chanjuan, van Dijk, Jeroen P., Scholtens, Ingrid M. J., Staats, Martijn, Prins, Theo W., Voorhuijzen, Marleen M., da Silva, Andrea M., Arisi, Ana Carolina Maisonnave, den Dunnen, Johan T., Kok, Esther J.
Published in Analytical and bioanalytical chemistry (01.04.2014)
Published in Analytical and bioanalytical chemistry (01.04.2014)
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Journal Article
Assessing the translational landscape of myogenic differentiation by ribosome profiling
de Klerk, Eleonora, Fokkema, Ivo F A C, Thiadens, Klaske A M H, Goeman, Jelle J, Palmblad, Magnus, den Dunnen, Johan T, von Lindern, Marieke, 't Hoen, Peter A C
Published in Nucleic acids research (19.05.2015)
Published in Nucleic acids research (19.05.2015)
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Journal Article
SplicePie: a novel analytical approach for the detection of alternative, non-sequential and recursive splicing
Pulyakhina, Irina, Gazzoli, Isabella, 't Hoen, Peter A C, Verwey, Nisha, den Dunnen, Johan T, Aartsma-Rus, Annemieke, Laros, Jeroen F J
Published in Nucleic acids research (15.12.2015)
Published in Nucleic acids research (15.12.2015)
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Journal Article
mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance
t Hoen, Peter A.C, Hirsch, Michael, Meijer, Emile J. de, Menezes, Renée X. de, van Ommen, Gertjan G.J, Dunnen, Johan T. den
Published in Nucleic acids research (01.01.2011)
Published in Nucleic acids research (01.01.2011)
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Journal Article
Generation and Characterization of Transgenic Mice with the Full-length Human DMD Gene
't Hoen, Peter A.C., de Meijer, Emile J., Boer, Judith M., Vossen, Rolf H.A.M., Turk, Rolf, Maatman, Ronald G.H.J., Davies, Kay E., van Ommen, Gert-Jan B., van Deutekom, Judith C.T., den Dunnen, Johan T.
Published in The Journal of biological chemistry (29.02.2008)
Published in The Journal of biological chemistry (29.02.2008)
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Journal Article
Serum protein profiling in mice: Identification of Factor XIIIa as a potential biomarker for muscular dystrophy
Alagaratnam, Sharmini, Mertens, Bart J. A., Dalebout, Johannes C., Deelder, André M., van Ommen, Gert-Jan B., den Dunnen, Johan T., 't Hoen, Peter A. C.
Published in Proteomics (Weinheim) (01.04.2008)
Published in Proteomics (Weinheim) (01.04.2008)
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Journal Article
Genome-wide assessment of differential roles for p300 and CBP in transcription regulation
Ramos, Yolande F M, Hestand, Matthew S, Verlaan, Matty, Krabbendam, Elise, Ariyurek, Yavuz, van Galen, Michiel, van Dam, Hans, van Ommen, Gert-Jan B, den Dunnen, Johan T, Zantema, Alt, 't Hoen, Peter A C
Published in Nucleic acids research (01.09.2010)
Published in Nucleic acids research (01.09.2010)
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Journal Article
Properties and units in the clinical laboratory sciences part XXIV. Properties and units in clinical molecular genetics (technical report 2017)
Petersen, Ulla M., Padró-Miquel, Ariadna, Taylor, Graham, Hertz, Jens Michael, Ceder, Rebecca, Fuentes-Arderiu, Xavier, den Dunnen, Johan T.
Published in Clinica chimica acta (01.09.2018)
Published in Clinica chimica acta (01.09.2018)
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Journal Article
Properties and units in the clinical laboratory sciences part XXIV. Properties and units in clinical molecular genetics (IUPAC Technical Report)
Petersen, Ulla M., Padró-Miquel, Ariadna, Taylor, Graham, Hertz, Jens Michael, Ceder, Rebecca, Fuentes-Arderiu, Xavier, den Dunnen, Johan T.
Published in Pure and applied chemistry (26.07.2018)
Published in Pure and applied chemistry (26.07.2018)
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Journal Article
Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies
Hestand, Matthew S, Klingenhoff, Andreas, Scherf, Matthias, Ariyurek, Yavuz, Ramos, Yolande, van Workum, Wilbert, Suzuki, Makoto, Werner, Thomas, van Ommen, Gert-Jan B, den Dunnen, Johan T, Harbers, Matthias, 't Hoen, Peter A C
Published in Nucleic acids research (01.09.2010)
Published in Nucleic acids research (01.09.2010)
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Journal Article
The PWWP domain: a potential protein–protein interaction domain in nuclear proteins influencing differentiation?
Stec, Ingrid, Nagl, Sylvia B., van Ommen, Gert-Jan B., den Dunnen, Johan T.
Published in FEBS Letters (04.05.2000)
Published in FEBS Letters (04.05.2000)
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Book Review
Journal Article
Reliable and controllable antibody fragment selections from Camelid non-immune libraries for target validation
Verheesen, Peter, Roussis, Andreas, de Haard, Hans J., Groot, Arjan J., Stam, Jord C., den Dunnen, Johan T., Frants, Rune R., Verkleij, Arie J., Theo Verrips, C., van der Maarel, Silvère M.
Published in Biochimica et biophysica acta (01.08.2006)
Published in Biochimica et biophysica acta (01.08.2006)
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Journal Article
Fluorescent labelling of cRNA for microarray applications
’t Hoen, Peter A. C., de Kort, Floor, van Ommen, G. J. B., den Dunnen, Johan T.
Published in Nucleic acids research (01.03.2003)
Published in Nucleic acids research (01.03.2003)
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Journal Article
A common reference for cDNA microarray hybridizations
Sterrenburg, Ellen, Turk, Rolf, Boer, Judith M., van Ommen, Gertjan B., den Dunnen, Johan T.
Published in Nucleic acids research (01.11.2002)
Published in Nucleic acids research (01.11.2002)
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Journal Article
Intensity‐based analysis of two‐colour microarrays enables efficient and flexible hybridization designs
’t Hoen, Peter A. C., Turk, Rolf, Boer, Judith M., Sterrenburg, Ellen, de Menezes, Renée X., van Ommen, Gert‐Jan B., den Dunnen, Johan T.
Published in Nucleic acids research (2004)
Published in Nucleic acids research (2004)
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