New Rapid Scheme for Distinguishing the Subspecies of the Mycobacterium abscessus Group and Identifying Mycobacterium massiliense Isolates with Inducible Clarithromycin Resistance
Shallom, Shamira J, Gardina, Paul J, Myers, Timothy G, Sebastian, Yinong, Conville, Patricia, Calhoun, Leslie B, Tettelin, Hervé, Olivier, Kenneth N, Uzel, Gulbu, Sampaio, Elizabeth P, Holland, Steven M, Zelazny, Adrian M
Published in Journal of Clinical Microbiology (01.09.2013)
Published in Journal of Clinical Microbiology (01.09.2013)
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Journal Article
Clonal Diversification and Changes in Lipid Traits and Colony Morphology in Mycobacterium abscessus Clinical Isolates
Park, In Kwon, Hsu, Amy P, Tettelin, Hervé, Shallom, Shamira J, Drake, Steven K, Ding, Li, Wu, Un-In, Adamo, Nick, Prevots, D Rebecca, Olivier, Kenneth N, Holland, Steven M, Sampaio, Elizabeth P, Zelazny, Adrian M
Published in Journal of clinical microbiology (01.11.2015)
Published in Journal of clinical microbiology (01.11.2015)
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Journal Article
Evolution of Mycobacterium abscessus in the human lung: Cumulative mutations and genomic rearrangement of porin genes in patient isolates
Shallom, Shamira J., Tettelin, Hervé, Chandrasekaran, Prabha, Park, In Kwon, Agrawal, Sonia, Arora, Kriti, Sadzewicz, Lisa, Milstone, Aaron M., Aitken, Moira L., Brown-Elliott, Barbara A., Wallace, Richard J., Sampaio, Elizabeth P., Niederweis, Michael, Olivier, Kenneth N., Holland, Steven M., Zelazny, Adrian M.
Published in Virulence (31.12.2023)
Published in Virulence (31.12.2023)
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Journal Article
Tissue specific diversification, virulence and immune response to Mycobacterium bovis BCG in a patient with an IFN-γ R1 deficiency
Korol, Cecilia B., Shallom, Shamira J., Arora, Kriti, Boshoff, Helena I., Freeman, Alexandra F., King, Alejandra, Agrawal, Sonia, Daugherty, Sean C., Jancel, Timothy, Kabat, Juraj, Ganesan, Sundar, Torrero, Marina N., Sampaio, Elizabeth P., Barry, Clifton, Holland, Steve M, Tettelin, Hervé, Rosenzweig, Sergio D, Zelazny, Adrian M.
Published in Virulence (01.12.2020)
Published in Virulence (01.12.2020)
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Journal Article
Disulfiram Is Effective against Drug-Resistant Mycobacterium abscessus in a Zebrafish Embryo Infection Model
Winters, Carlynn G, Basnet, Ram M, Faasuamalie, Paige E, Shallom, Shamira J, Zelazny, Adrian M, Gupta, Shashank, Olivier, Kenneth N
Published in Antimicrobial agents and chemotherapy (15.11.2022)
Published in Antimicrobial agents and chemotherapy (15.11.2022)
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Journal Article
A species independent universal bio-detection microarray for pathogen forensics and phylogenetic classification of unknown microorganisms
Shallom, Shamira J, Weeks, Jenni N, Galindo, Cristi L, McIver, Lauren, Sun, Zhaohui, McCormick, John, Adams, L Garry, Garner, Harold R
Published in BMC microbiology (14.06.2011)
Published in BMC microbiology (14.06.2011)
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Journal Article
New Real-Time PCR Assays for Detection of Inducible and Acquired Clarithromycin Resistance in the Mycobacterium abscessus Group
Shallom, Shamira J, Moura, Natalia S, Olivier, Kenneth N, Sampaio, Elizabeth P, Holland, Steven M, Zelazny, Adrian M
Published in Journal of clinical microbiology (01.11.2015)
Published in Journal of clinical microbiology (01.11.2015)
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Journal Article
Genome sequence of the human malaria parasite Plasmodium falciparum
Gardner, Malcolm J, Hall, Neil, Fung, Eula, White, Owen, Berriman, Matthew, Hyman, Richard W, Carlton, Jane M, Pain, Arnab, Nelson, Karen E, Bowman, Sharen, Paulsen, Ian T, James, Keith, Eisen, Jonathan A, Rutherford, Kim, Salzberg, Steven L, Craig, Alister, Kyes, Sue, Chan, Man-Suen, Nene, Vishvanath, Shallom, Shamira J, Suh, Bernard, Peterson, Jeremy, Angiuoli, Sam, Pertea, Mihaela, Allen, Jonathan, Selengut, Jeremy, Haft, Daniel, Mather, Michael W, Vaidya, Akhil B, Martin, David M. A, Fairlamb, Alan H, Fraunholz, Martin J, Roos, David S, Ralph, Stuart A, McFadden, Geoffrey I, Cummings, Leda M, Subramanian, G. Mani, Mungall, Chris, Venter, J. Craig, Carucci, Daniel J, Hoffman, Stephen L, Newbold, Chris, Davis, Ronald W, Fraser, Claire M, Barrell, Bart
Published in Nature (London) (03.10.2002)
Published in Nature (London) (03.10.2002)
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Journal Article
Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes
Gardner, Malcolm J., Bishop, Richard, Shah, Trushar, de Villiers, Etienne P., Carlton, Jane M., Hall, Neil, Ren, Qinghu, Paulsen, Ian T., Pain, Arnab, Berriman, Matthew, Robert J. M. Wilson, Sato, Shigeharu, Ralph, Stuart A., Mann, David J., Xiong, Zikai, Shallom, Shamira J., Weidman, Janice, Jiang, Lingxia, Lynn, Jeffery, Weaver, Bruce, Shoaibi, Azadeh, Domingo, Alexander R., Wasawo, Delia, Crabtree, Jonathan, Wortman, Jennifer R., Haas, Brian, Angiuoli, Samuel V., Creasy, Todd H., Lu, Charles, Suh, Bernard, Silva, Joana C., Utterback, Teresa R., Feldblyum, Tamara V., Pertea, Mihaela, Allen, Jonathan, Nierman, William C., Evans L. N. Taracha, Salzberg, Steven L., White, Owen R., Fitzhugh, Henry A., Morzaria, Subhash, Venter, J. Craig, Fraser, Claire M., Nene, Vishvanath
Published in Science (American Association for the Advancement of Science) (01.07.2005)
Published in Science (American Association for the Advancement of Science) (01.07.2005)
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Journal Article
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
Carlton, Jane M, Angiuoli, Samuel V, Suh, Bernard B, Kooij, Taco W, Pertea, Mihaela, Silva, Joana C, Ermolaeva, Maria D, Allen, Jonathan E, Selengut, Jeremy D, Koo, Hean L, Peterson, Jeremy D, Pop, Mihai, Kosack, Daniel S, Shumway, Martin F, Bidwell, Shelby L, Shallom, Shamira J, van Aken, Susan E, Riedmuller, Steven B, Feldblyum, Tamara V, Cho, Jennifer K, Quackenbush, John, Sedegah, Martha, Shoaibi, Azadeh, Cummings, Leda M, Florens, Laurence, Yates, John R, Raine, J. Dale, Sinden, Robert E, Harris, Michael A, Cunningham, Deirdre A, Preiser, Peter R, Bergman, Lawrence W, Vaidya, Akhil B, van Lin, Leo H, Janse, Chris J, Waters, Andrew P, Smith, Hamilton O, White, Owen R, Salzberg, Steven L, Venter, J. Craig, Fraser, Claire M, Hoffman, Stephen L, Gardner, Malcolm J, Carucci, Daniel J
Published in Nature (London) (03.10.2002)
Published in Nature (London) (03.10.2002)
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Journal Article
Patients with Idiopathic Pulmonary Nontuberculous Mycobacterial Disease Have Normal Th1/Th2 Cytokine Responses but Diminished Th17 Cytokine and Enhanced Granulocyte-Macrophage Colony-Stimulating Factor Production
Wu, Un-In, Olivier, Kenneth N, Kuhns, Douglas B, Fink, Danielle L, Sampaio, Elizabeth P, Zelazny, Adrian M, Shallom, Shamira J, Marciano, Beatriz E, Lionakis, Michail S, Holland, Steven M
Published in Open forum infectious diseases (01.12.2019)
Published in Open forum infectious diseases (01.12.2019)
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Journal Article
Comparison of genome diversity of Brucella spp. field isolates using Universal Bio-signature Detection Array and whole genome sequencing reveals limitations of current diagnostic methods
Shallom, Shamira J., Tae, Hongseok, Sarmento, Luciana, Preston, Dale, McIver, Lauren, Franck, Christopher, Dickerman, Allan, Adams, L. Garry, Garner, Harold R.
Published in Gene (01.11.2012)
Published in Gene (01.11.2012)
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Journal Article
Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14
Gardner, Malcolm J, Shallom, Shamira J, Carlton, Jane M, Salzberg, Steven L, Nene, Vishvanath, Shoaibi, Azadeh, Ciecko, Anne, Lynn, Jeffery, Rizzo, Michael, Weaver, Bruce, Jarrahi, Behnam, Brenner, Michael, Parvizi, Babak, Tallon, Luke, Moazzez, Azita, Granger, David, Fujii, Claire, Hansen, Cheryl, Pederson, James, Feldblyum, Tamara, Peterson, Jeremy, Suh, Bernard, Angiuoli, Sam, Pertea, Mihaela, Allen, Jonathan, Selengut, Jeremy, White, Owen, Cummings, Leda M, Smith, Hamilton O, Adams, Mark D, Venter, J. Craig, Carucci, Daniel J, Hoffman, Stephen L, Fraser, Claire M
Published in Nature (London) (03.10.2002)
Published in Nature (London) (03.10.2002)
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Journal Article