A RESTful API for accessing microbial community data for MG-RAST
Wilke, Andreas, Bischof, Jared, Harrison, Travis, Brettin, Tom, D'Souza, Mark, Gerlach, Wolfgang, Matthews, Hunter, Paczian, Tobias, Wilkening, Jared, Glass, Elizabeth M, Desai, Narayan, Meyer, Folker
Published in PLoS computational biology (01.01.2015)
Published in PLoS computational biology (01.01.2015)
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Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella
Foster, Jeffrey T, Beckstrom-Sternberg, Stephen M, Pearson, Talima, Beckstrom-Sternberg, James S, Chain, Patrick S G, Roberto, Francisco F, Hnath, Jonathan, Brettin, Tom, Keim, Paul
Published in Journal of Bacteriology (01.04.2009)
Published in Journal of Bacteriology (01.04.2009)
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Genome of Methylobacillus flagellatus, Molecular Basis for Obligate Methylotrophy, and Polyphyletic Origin of Methylotrophy
CHISTOSERDOVA, Ludmila, LAPIDUS, Alla, LIDSTROM, Mary E, HAN, Cliff, GOODWIN, Lynne, SAUNDERS, Liz, BRETTIN, Tom, TAPIA, Roxanne, GILNA, Paul, LUCAS, Susan, RICHARDSON, Paul M
Published in Journal of Bacteriology (01.06.2007)
Published in Journal of Bacteriology (01.06.2007)
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Pandemic drugs at pandemic speed: infrastructure for accelerating COVID-19 drug discovery with hybrid machine learning- and physics-based simulations on high-performance computers
Bhati, Agastya P, Wan, Shunzhou, Alfè, Dario, Clyde, Austin R, Bode, Mathis, Tan, Li, Titov, Mikhail, Merzky, Andre, Turilli, Matteo, Jha, Shantenu, Highfield, Roger R, Rocchia, Walter, Scafuri, Nicola, Succi, Sauro, Kranzlmüller, Dieter, Mathias, Gerald, Wifling, David, Donon, Yann, Di Meglio, Alberto, Vallecorsa, Sofia, Ma, Heng, Trifan, Anda, Ramanathan, Arvind, Brettin, Tom, Partin, Alexander, Xia, Fangfang, Duan, Xiaotan, Stevens, Rick, Coveney, Peter V
Published in Interface focus (12.10.2021)
Published in Interface focus (12.10.2021)
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Towards a modular architecture for science factories
Vescovi, Rafael, Ginsburg, Tobias, Hippe, Kyle, Ozgulbas, Doga, Stone, Casey, Stroka, Abraham, Butler, Rory, Blaiszik, Ben, Brettin, Tom, Chard, Kyle, Hereld, Mark, Ramanathan, Arvind, Stevens, Rick, Vriza, Aikaterini, Xu, Jie, Zhang, Qingteng, Foster, Ian
Published in Digital discovery (04.12.2023)
Published in Digital discovery (04.12.2023)
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Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks
Makarova, Kira S, Omelchenko, Marina V, Gaidamakova, Elena K, Matrosova, Vera Y, Vasilenko, Alexander, Zhai, Min, Lapidus, Alla, Copeland, Alex, Kim, Edwin, Land, Miriam, Mavrommatis, Konstantinos, Pitluck, Samuel, Richardson, Paul M, Detter, Chris, Brettin, Thomas, Saunders, Elizabeth, Lai, Barry, Ravel, Bruce, Kemner, Kenneth M, Wolf, Yuri I, Sorokin, Alexander, Gerasimova, Anna V, Gelfand, Mikhail S, Fredrickson, James K, Koonin, Eugene V, Daly, Michael J
Published in PloS one (26.09.2007)
Published in PloS one (26.09.2007)
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Genomics of an extreme psychrophile, Psychromonas ingrahamii
Riley, Monica, Staley, James T, Danchin, Antoine, Wang, Ting Zhang, Brettin, Thomas S, Hauser, Loren J, Land, Miriam L, Thompson, Linda S
Published in BMC genomics (06.05.2008)
Published in BMC genomics (06.05.2008)
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A RESTful API for Accessing Microbial Community Data for MG-RAST: e1004008
Wilke, Andreas, Bischof, Jared, Harrison, Travis, Brettin, Tom, Gerlach, Wolfgang, Matthews, Hunter, Paczian, Tobias, Wilkening, Jared, Glass, Elizabeth M, Desai, Narayan, Meyer, Folker
Published in PLoS computational biology (01.01.2015)
Published in PLoS computational biology (01.01.2015)
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Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b
VISHNIVETSKAYA, Tatiana A, LUCAS, Susan, SAUNDERS, E, BRETTIN, Tom, DETTER, Chris, HAN, Cliff, LARIMER, Frank, LAND, Miriam L, HAUSER, Loren J, KYRPIDES, Nikos C, OVCHINNIKOVA, Galina, KATHARIOU, Sophia, COPELAND, Alex, RAMALEY, Robert F, RODRIGUES, Debora F, HENDRIX, Christie, RICHARDSON, Paul, TIEDJE, James M, LAPIDUS, Alia, GLAVINA DEL RIO, Tijana, DALIN, E, TICE, Hope, BRUCE, David C, GOODWIN, Lynne A, PITLUCK, Sam
Published in Journal of Bacteriology (01.06.2011)
Published in Journal of Bacteriology (01.06.2011)
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Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylellaspecies and in heterocystous cyanobacteria
Xie, Gary, Bonner, Carol A, Brettin, Tom, Gottardo, Raphael, Keyhani, Nemat O, Jensen, Roy A
Published in Genome biology (29.01.2003)
Published in Genome biology (29.01.2003)
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The genome of Methylobacillus flagellatus, the molecular basis forobligate methylotrophy, and the polyphyletic origin ofmethylotrophy
Chistoserdova, Ludmila, Lapidus, Alla, Han, Cliff, Goodwin,Lynne, Saunders, Liz, Brettin, Tom, Tapia, Roxanne, Gilna, Paul, Lucas,Susan, Richardson, Paul M., Lidstrom, Mary E.
Published in Journal of bacteriology (08.01.2007)
Published in Journal of bacteriology (08.01.2007)
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Towards a Modular Architecture for Science Factories
Vescovi, Rafael, Ginsburg, Tobias, Hippe, Kyle, Ozgulbas, Doga, Stone, Casey, Stroka, Abraham, Butler, Rory, Blaiszik, Ben, Brettin, Tom, Chard, Kyle, Hereld, Mark, Ramanathan, Arvind, Stevens, Rick, Vriza, Aikaterini, Xu, Jie, Zhang, Qingteng, Foster, Ian
Year of Publication 18.08.2023
Year of Publication 18.08.2023
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Scalable Reinforcement-Learning-Based Neural Architecture Search for Cancer Deep Learning Research
Balaprakash, Prasanna, Egele, Romain, Salim, Misha, Wild, Stefan, Vishwanath, Venkatram, Xia, Fangfang, Brettin, Tom, Stevens, Rick
Published in arXiv.org (01.09.2019)
Published in arXiv.org (01.09.2019)
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A Systematic Approach to Featurization for Cancer Drug Sensitivity Predictions with Deep Learning
Clyde, Austin, Brettin, Tom, Partin, Alexander, Shaulik, Maulik, Yoo, Hyunseung, Evrard, Yvonne, Zhu, Yitan, Xia, Fangfang, Stevens, Rick
Year of Publication 30.04.2020
Year of Publication 30.04.2020
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Fungal genome sequencing and bioenergy
Baker, Scott E., Thykaer, Jette, Adney, William S., Brettin, Thomas S., Brockman, Fred J., D'haeseleer, Patrik, Martinez, A. Diego, Miller, R. Michael, Rokhsar, Daniel S., Schadt, Christopher W., Torok, Tamas, Tuskan, Gerald, Bennett, Joan, Berka, Randy M., Briggs, Steven P., Heitman, Joseph, Taylor, John, Gillian Turgeon, B., Werner-Washburne, Margaret, Himmel, Michael E.
Published in Fungal biology reviews (01.02.2008)
Published in Fungal biology reviews (01.02.2008)
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Pandemic Drugs at Pandemic Speed: Infrastructure for Accelerating COVID-19 Drug Discovery with Hybrid Machine Learning- and Physics-based Simulations on High Performance Computers
Bhati, Agastya P, Wan, Shunzhou, Alfè, Dario, Clyde, Austin R, Bode, Mathis, Tan, Li, Titov, Mikhail, Merzky, Andre, Turilli, Matteo, Jha, Shantenu, Highfield, Roger R, Rocchia, Walter, Scafuri, Nicola, Succi, Sauro, Kranzlmüller, Dieter, Mathias, Gerald, Wifling, David, Donon, Yann, Alberto Di Meglio, Vallecorsa, Sofia, Ma, Heng, Trifan, Anda, Ramanathan, Arvind, Brettin, Tom, Partin, Alexander, Xia, Fangfang, Duan, Xiaotan, Stevens, Rick, Coveney, Peter V
Published in arXiv.org (04.09.2021)
Published in arXiv.org (04.09.2021)
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Targeting SARS-CoV-2 with AI- and HPC-enabled Lead Generation: A First Data Release
Babuji, Yadu, Blaiszik, Ben, Brettin, Tom, Chard, Kyle, Chard, Ryan, Clyde, Austin, Foster, Ian, Hong, Zhi, Jha, Shantenu, Li, Zhuozhao, Liu, Xuefeng, Ramanathan, Arvind, Ren, Yi, Saint, Nicholaus, Schwarting, Marcus, Stevens, Rick, van Dam, Hubertus, Wagner, Rick
Year of Publication 27.05.2020
Year of Publication 27.05.2020
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Journal Article
Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylella species and in heterocystous cyanobacteria
Xie, Gary, Bonner, Carol A, Brettin, Tom, Gottardo, Raphael, Keyhani, Nemat O, Jensen, Roy A
Published in Genome biology (2003)
Published in Genome biology (2003)
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Complete genome sequence of Desulfomicrobium baculatum type strain (X)
Copeland, Alex, Spring, Stefan, Göker, Markus, Schneider, Susanne, Lapidus, Alla, Del Rio, Tijana Glavina, Tice, Hope, Cheng, Jan-Fang, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavrommatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia C, Meincke, Linda, Sims, David, Brettin, Thomas, Detter, John C, Han, Cliff, Chain, Patrick, Bristow, Jim, Eisen, Jonathan A, Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C, Klenk, Hans-Peter, Lucas, Susan
Published in Standards in genomic sciences (20.07.2009)
Published in Standards in genomic sciences (20.07.2009)
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Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255)
Saunders, Elizabeth, Pukall, Rüdiger, Abt, Birte, Lapidus, Alla, Glavina Del Rio, Tijana, Copeland, Alex, Tice, Hope, Cheng, Jan-Fang, Lucas, Susan, Chen, Feng, Nolan, Matt, Bruce, David, Goodwin, Lynne, Pitluck, Sam, Ivanova, Natalia, Mavromatis, Konstantinos, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Hauser, Loren, Chang, Yun-Juan, Jeffries, Cynthia D, Chain, Patrick, Meincke, Linda, Sims, David, Brettin, Thomas, Detter, John C, Göker, Markus, Bristow, Jim, Eisen, Jonathan A, Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C, Klenk, Hans-Peter, Han, Cliff
Published in Standards in genomic sciences (28.09.2009)
Published in Standards in genomic sciences (28.09.2009)
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