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Improved Cell-Type Identification and Comprehensive Mapping of Regulatory Features with Spatial Epigenomics 96-Channel Microfluidic Platform
Kartiganer, Zev, Rojas, Gumaro, Riccio, Machele, Tyree, Abigail, Noronha, Katelyn, Wetzel, Molly, Barnett, Joshua, McGann, James, Garbarino, Jennifer, Massucci, Daniel, Sotoudeh Chafi, Nouroddin, Decker, Silas, McDaniels, Arianna, Sabina, Jeffrey, Levchenko, David, Perez, Jose, Ng, Colin, Wang, Kenneth
Published in GEN biotechnology (Print) (01.12.2023)
Published in GEN biotechnology (Print) (01.12.2023)
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Journal Article
scReClassify: post hoc cell type classification of single-cell rNA-seq data
Kim, Taiyun, Lo, Kitty, Geddes, Thomas A., Kim, Hani Jieun, Yang, Jean Yee Hwa, Yang, Pengyi
Published in BMC genomics (24.12.2019)
Published in BMC genomics (24.12.2019)
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Journal Article
scCATCH: Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Shao, Xin, Liao, Jie, Lu, Xiaoyan, Xue, Rui, Ai, Ni, Fan, Xiaohui
Published in iScience (27.03.2020)
Published in iScience (27.03.2020)
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Journal Article
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation
Zhang, Fan, Mears, Joseph R., Shakib, Lorien, Beynor, Jessica I., Shanaj, Sara, Korsunsky, Ilya, Nathan, Aparna, Donlin, Laura T., Raychaudhuri, Soumya
Published in Genome medicine (20.04.2021)
Published in Genome medicine (20.04.2021)
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Journal Article
Construction of an artificial neural network diagnostic model and investigation of immune cell infiltration characteristics for idiopathic pulmonary fibrosis
Zhang, Huizhe, Hua, Haibing, Wang, Cong, Zhu, Chenjing, Xia, Qingqing, Jiang, Weilong, Hu, Xiaodong, Zhang, Yufeng
Published in BMC pulmonary medicine (17.09.2024)
Published in BMC pulmonary medicine (17.09.2024)
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Journal Article
Integration and transfer learning of single-cell transcriptomes via cFIT
Peng, Minshi, Li, Yue, Wamsley, Brie, Wei, Yuting, Roeder, Kathryn
Published in Proceedings of the National Academy of Sciences - PNAS (09.03.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (09.03.2021)
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Journal Article
IFN-[gamma] and TNF-[alpha] drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation
Zhang, Fan, Mears, Joseph R, Shakib, Lorien, Beynor, Jessica I, Shanaj, Sara, Korsunsky, Ilya, Nathan, Aparna, Donlin, Laura T, Raychaudhuri, Soumya
Published in Genome medicine (20.04.2021)
Published in Genome medicine (20.04.2021)
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Journal Article
Detection of extracellular superoxide in isolated human immune cells and in an animal model of arterial hypertension using hydropropidine probe and HPLC analysis
Kalinovic, Sanela, Stamm, Paul, Oelze, Matthias, Steven, Sebastian, Kröller-Schön, Swenja, Kvandova, Miroslava, Zielonka, Jacek, Münzel, Thomas, Daiber, Andreas
Published in Free radical biology & medicine (20.05.2021)
Published in Free radical biology & medicine (20.05.2021)
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Journal Article
Immunohistochemical localization of pepsinogen A and C containing cells in Barrett's oesophagus
Meuwissen, S G, Bosma, A, van Donk, E, Waalewijn, R, Pals, G, Pronk, J C, Eriksson, A W, Mullink, H, Meijer, C J
Published in Virchows Archiv. A, Pathological anatomy and histopathology (1988)
Published in Virchows Archiv. A, Pathological anatomy and histopathology (1988)
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Journal Article